STRINGSTRING
hemL hemL Nmar_0148 Nmar_0148 Nmar_0414 Nmar_0414 Nmar_0341 Nmar_0341 Nmar_0177 Nmar_0177 glyA glyA Nmar_0819 Nmar_0819 Nmar_0954 Nmar_0954 Nmar_0822 Nmar_0822 Nmar_0865 Nmar_0865 Nmar_0833 Nmar_0833 Nmar_1627 Nmar_1627 Nmar_1585 Nmar_1585 Nmar_1557 Nmar_1557 Nmar_1549 Nmar_1549 Nmar_1345 Nmar_1345 lysJ lysJ Nmar_1072 Nmar_1072 Nmar_1017 Nmar_1017 Nmar_0978 Nmar_0978 Nmar_0958 Nmar_0958
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
hemLTIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: mja:MJ0603 glutamate-1-semialdehyde aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. HemL subfamily. (424 aa)
Nmar_0148PFAM: aminotransferase class-III; KEGG: swo:Swol_0203 aminotransferase, class III pyridoxal-phosphate dependent; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (442 aa)
Nmar_0414TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: tth:TTC1592 2-oxoacid-ferredoxin oxidoreductase. (320 aa)
Nmar_0341Cysteine desulfurase; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: chy:CHY_2199 cysteine desulfurase. (388 aa)
Nmar_0177PFAM: aminotransferase class I and II; KEGG: pab:PAB1810 aspartate aminotransferase (aspB-like2). (391 aa)
glyAGlycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with a modified folate serving as the one-carbon carrier. Also exhibits a pteridine-independent aldolase activity toward beta- hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (440 aa)
Nmar_08198-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II; KEGG: tac:Ta1189 8-amino-7-oxononanoate synthase. (374 aa)
Nmar_0954KEGG: tte:TTE1217 Methylmalonyl-CoA mutase, N-terminal domain/subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase. (532 aa)
Nmar_0822PFAM: aminotransferase class-III; KEGG: sae:NWMN_2325 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (426 aa)
Nmar_0865PFAM: aminotransferase class I and II; KEGG: mhu:Mhun_1459 aminotransferase, class I and II. (452 aa)
Nmar_0833Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine. (445 aa)
Nmar_1627Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. (884 aa)
Nmar_1585PFAM: aminotransferase class I and II; KEGG: cbe:Cbei_1269 putative L-threonine-O-3-phosphate decarboxylase. (359 aa)
Nmar_1557PFAM: aminotransferase class I and II; KEGG: amt:Amet_0573 histidinol-phosphate aminotransferase. (356 aa)
Nmar_1549Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine. (404 aa)
Nmar_1345TIGRFAM: 2,4-diaminobutyrate 4-transaminase; diaminobutyrate--2-oxoglutarate aminotransferase; PFAM: aminotransferase class-III; KEGG: mmw:Mmwyl1_1159 diaminobutyrate--2-oxoglutarate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (431 aa)
lysJAcetylornithine and succinylornithine aminotransferase; Involved in both the arginine and lysine biosynthetic pathways; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. LysJ subfamily. (393 aa)
Nmar_1072TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: pfu:PF0935 acetolactate synthase large subunit. (566 aa)
Nmar_1017PFAM: aminotransferase class-III; KEGG: hbu:Hbut_1430 glutamate-1-semialdehyde 2,1-aminomutase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (435 aa)
Nmar_0978Response regulator receiver protein; PFAM: cobalamin B12-binding domain protein; KEGG: bba:Bd0931 transcriptional regulator, MerR family. (280 aa)
Nmar_0958PFAM: cobalamin B12-binding domain protein; KEGG: tte:TTE2388 methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding). (140 aa)
Your Current Organism:
Nitrosopumilus maritimus
NCBI taxonomy Id: 436308
Other names: N. maritimus SCM1, Nitrosopumilus maritimus SCM1, Nitrosopumilus maritimus str. SCM1, Nitrosopumilus maritimus strain SCM1, Seattle Aquarium strain SCM1
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