(12 nodes) Mixed, incl. Styrene degradation, and Phenylalanine metabolism network (Pseudoalteromonas rubra)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALU43441.1	Isomerase/hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
	ALU43442.1	Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)
	phhA	Phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	ALU44466.1	Pterin-4-alpha-carbinolamine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (114 aa)
	ALU44704.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (202 aa)
	ALU44705.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (124 aa)
	ALU44706.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)
	fahA	Fumarylacetoacetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (437 aa)
	hppD	4-hydroxyphenylpyruvate dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (348 aa)
	maiA	Maleylacetoacetate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)
	ALU45524.1	An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine; Derived by automated computational analysis using gene prediction method: Protein Homology. (431 aa)
	ALU45525.1	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa)

Your Current Organism:

Pseudoalteromonas rubra

NCBI taxonomy Id: 43658
Other names: ATCC 29570, Alteromonas rubra, CIP 104110, DSM 6842, LMG 2876, LMG:2876, P. rubra

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALU43441.1	ALU43442.1	AT705_11095	AT705_11100	Isomerase/hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.519
ALU43441.1	ALU45524.1	AT705_11095	AT705_21535	Isomerase/hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.700
ALU43441.1	hppD	AT705_11095	AT705_18220	Isomerase/hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-hydroxyphenylpyruvate dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
ALU43442.1	ALU43441.1	AT705_11100	AT705_11095	Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Isomerase/hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.519
ALU44466.1	ALU45524.1	AT705_16935	AT705_21535	Pterin-4-alpha-carbinolamine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
ALU44466.1	fahA	AT705_16935	AT705_18215	Pterin-4-alpha-carbinolamine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fumarylacetoacetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.504
ALU44466.1	hppD	AT705_16935	AT705_18220	Pterin-4-alpha-carbinolamine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-hydroxyphenylpyruvate dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.706
ALU44466.1	phhA	AT705_16935	AT705_16930	Pterin-4-alpha-carbinolamine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
ALU44704.1	ALU44705.1	AT705_18200	AT705_18205	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.464
ALU44704.1	ALU44706.1	AT705_18200	AT705_18210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.464
ALU44705.1	ALU44704.1	AT705_18205	AT705_18200	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.464
ALU44705.1	ALU44706.1	AT705_18205	AT705_18210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.938
ALU44705.1	fahA	AT705_18205	AT705_18215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fumarylacetoacetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.786
ALU44705.1	hppD	AT705_18205	AT705_18220	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-hydroxyphenylpyruvate dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.710
ALU44706.1	ALU44704.1	AT705_18210	AT705_18200	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.464
ALU44706.1	ALU44705.1	AT705_18210	AT705_18205	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.938
ALU44706.1	fahA	AT705_18210	AT705_18215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fumarylacetoacetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.786
ALU44706.1	hppD	AT705_18210	AT705_18220	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-hydroxyphenylpyruvate dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.714
ALU45524.1	ALU43441.1	AT705_21535	AT705_11095	An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine; Derived by automated computational analysis using gene prediction method: Protein Homology.	Isomerase/hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.700
ALU45524.1	ALU44466.1	AT705_21535	AT705_16935	An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pterin-4-alpha-carbinolamine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655