(7 nodes) DASH complex network (Vanderwaltozyma polyspora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Kpol_1018p78	Uncharacterized protein. (109 aa)
	Kpol_1002p95	Uncharacterized protein. (84 aa)
	Kpol_1050p91	Uncharacterized protein. (345 aa)
	Kpol_1031p37	Uncharacterized protein. (284 aa)
	Kpol_1037p55	Uncharacterized protein. (82 aa)
	Kpol_1064p57	Uncharacterized protein. (154 aa)
	Kpol_461p5	Uncharacterized protein. (206 aa)

Your Current Organism:

Vanderwaltozyma polyspora

NCBI taxonomy Id: 436907
Other names: V. polyspora DSM 70294, Vanderwaltozyma polyspora DSM 70294, Vanderwaltozyma polyspora DSMZ 70294

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Kpol_1002p95	Kpol_1018p78	A7TEC5	A7TDS6	Uncharacterized protein.	Uncharacterized protein.	0.957
Kpol_1002p95	Kpol_1031p37	A7TEC5	A7THX1	Uncharacterized protein.	Uncharacterized protein.	0.969
Kpol_1002p95	Kpol_1037p55	A7TEC5	A7TJZ6	Uncharacterized protein.	Uncharacterized protein.	0.860
Kpol_1002p95	Kpol_1050p91	A7TEC5	A7TEY5	Uncharacterized protein.	Uncharacterized protein.	0.962
Kpol_1002p95	Kpol_1064p57	A7TEC5	A7TMI1	Uncharacterized protein.	Uncharacterized protein.	0.934
Kpol_1002p95	Kpol_461p5	A7TEC5	A7TR42	Uncharacterized protein.	Uncharacterized protein.	0.764
Kpol_1018p78	Kpol_1002p95	A7TDS6	A7TEC5	Uncharacterized protein.	Uncharacterized protein.	0.957
Kpol_1018p78	Kpol_1031p37	A7TDS6	A7THX1	Uncharacterized protein.	Uncharacterized protein.	0.964
Kpol_1018p78	Kpol_1037p55	A7TDS6	A7TJZ6	Uncharacterized protein.	Uncharacterized protein.	0.872
Kpol_1018p78	Kpol_1050p91	A7TDS6	A7TEY5	Uncharacterized protein.	Uncharacterized protein.	0.959
Kpol_1018p78	Kpol_1064p57	A7TDS6	A7TMI1	Uncharacterized protein.	Uncharacterized protein.	0.965
Kpol_1018p78	Kpol_461p5	A7TDS6	A7TR42	Uncharacterized protein.	Uncharacterized protein.	0.838
Kpol_1031p37	Kpol_1002p95	A7THX1	A7TEC5	Uncharacterized protein.	Uncharacterized protein.	0.969
Kpol_1031p37	Kpol_1018p78	A7THX1	A7TDS6	Uncharacterized protein.	Uncharacterized protein.	0.964
Kpol_1031p37	Kpol_1037p55	A7THX1	A7TJZ6	Uncharacterized protein.	Uncharacterized protein.	0.924
Kpol_1031p37	Kpol_1050p91	A7THX1	A7TEY5	Uncharacterized protein.	Uncharacterized protein.	0.965
Kpol_1031p37	Kpol_1064p57	A7THX1	A7TMI1	Uncharacterized protein.	Uncharacterized protein.	0.983
Kpol_1031p37	Kpol_461p5	A7THX1	A7TR42	Uncharacterized protein.	Uncharacterized protein.	0.929
Kpol_1037p55	Kpol_1002p95	A7TJZ6	A7TEC5	Uncharacterized protein.	Uncharacterized protein.	0.860
Kpol_1037p55	Kpol_1018p78	A7TJZ6	A7TDS6	Uncharacterized protein.	Uncharacterized protein.	0.872