(5 nodes) NMS complex network (Vanderwaltozyma polyspora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Kpol_489p8	DUF5595 domain-containing protein. (705 aa)
	Kpol_2000p75	Uncharacterized protein. (236 aa)
	Kpol_1002p72	Spc7 domain-containing protein. (847 aa)
	Kpol_1018p151	Uncharacterized protein. (236 aa)
	Kpol_1032p20	Uncharacterized protein. (467 aa)

Your Current Organism:

Vanderwaltozyma polyspora

NCBI taxonomy Id: 436907
Other names: V. polyspora DSM 70294, Vanderwaltozyma polyspora DSM 70294, Vanderwaltozyma polyspora DSMZ 70294

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Kpol_1002p72	Kpol_1018p151	A7TEA3	A7TDZ2	Spc7 domain-containing protein.	Uncharacterized protein.	0.758
Kpol_1002p72	Kpol_1032p20	A7TEA3	A7TGX5	Spc7 domain-containing protein.	Uncharacterized protein.	0.671
Kpol_1002p72	Kpol_2000p75	A7TEA3	A7TF82	Spc7 domain-containing protein.	Uncharacterized protein.	0.570
Kpol_1002p72	Kpol_489p8	A7TEA3	A7TQ22	Spc7 domain-containing protein.	DUF5595 domain-containing protein.	0.603
Kpol_1018p151	Kpol_1002p72	A7TDZ2	A7TEA3	Uncharacterized protein.	Spc7 domain-containing protein.	0.758
Kpol_1018p151	Kpol_1032p20	A7TDZ2	A7TGX5	Uncharacterized protein.	Uncharacterized protein.	0.940
Kpol_1018p151	Kpol_2000p75	A7TDZ2	A7TF82	Uncharacterized protein.	Uncharacterized protein.	0.994
Kpol_1018p151	Kpol_489p8	A7TDZ2	A7TQ22	Uncharacterized protein.	DUF5595 domain-containing protein.	0.988
Kpol_1032p20	Kpol_1002p72	A7TGX5	A7TEA3	Uncharacterized protein.	Spc7 domain-containing protein.	0.671
Kpol_1032p20	Kpol_1018p151	A7TGX5	A7TDZ2	Uncharacterized protein.	Uncharacterized protein.	0.940
Kpol_1032p20	Kpol_2000p75	A7TGX5	A7TF82	Uncharacterized protein.	Uncharacterized protein.	0.999
Kpol_1032p20	Kpol_489p8	A7TGX5	A7TQ22	Uncharacterized protein.	DUF5595 domain-containing protein.	0.999
Kpol_2000p75	Kpol_1002p72	A7TF82	A7TEA3	Uncharacterized protein.	Spc7 domain-containing protein.	0.570
Kpol_2000p75	Kpol_1018p151	A7TF82	A7TDZ2	Uncharacterized protein.	Uncharacterized protein.	0.994
Kpol_2000p75	Kpol_1032p20	A7TF82	A7TGX5	Uncharacterized protein.	Uncharacterized protein.	0.999
Kpol_2000p75	Kpol_489p8	A7TF82	A7TQ22	Uncharacterized protein.	DUF5595 domain-containing protein.	0.999
Kpol_489p8	Kpol_1002p72	A7TQ22	A7TEA3	DUF5595 domain-containing protein.	Spc7 domain-containing protein.	0.603
Kpol_489p8	Kpol_1018p151	A7TQ22	A7TDZ2	DUF5595 domain-containing protein.	Uncharacterized protein.	0.988
Kpol_489p8	Kpol_1032p20	A7TQ22	A7TGX5	DUF5595 domain-containing protein.	Uncharacterized protein.	0.999
Kpol_489p8	Kpol_2000p75	A7TQ22	A7TF82	DUF5595 domain-containing protein.	Uncharacterized protein.	0.999