(15 nodes) Regulation of intracellular protein transport network (Vanderwaltozyma polyspora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Kpol_1070p32	cAMP-dependent protein kinase regulatory subunit. (425 aa)
	Kpol_2001p63	WD_REPEATS_REGION domain-containing protein. (1276 aa)
	Kpol_363p6	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family. (318 aa)
	Kpol_413p7	Protein kinase domain-containing protein. (634 aa)
	Kpol_1029p10	Chromatin modification-related protein. (365 aa)
	Kpol_461p19	Uncharacterized protein. (451 aa)
	Kpol_1008p4	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (458 aa)
	Kpol_1019p30	WD_REPEATS_REGION domain-containing protein. (1252 aa)
	Kpol_1014p1	Uncharacterized protein. (169 aa)
	Kpol_1064p42	Protein kinase domain-containing protein. (544 aa)
	Kpol_1033p51	Protein kinase domain-containing protein. (440 aa)
	Kpol_1043p51	Phosphatidylinositol 3-kinase VPS34. (868 aa)
	Kpol_1002p39	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family. (188 aa)
	Kpol_1002p53	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (459 aa)
	Kpol_1002p111	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (349 aa)

Your Current Organism:

Vanderwaltozyma polyspora

NCBI taxonomy Id: 436907
Other names: V. polyspora DSM 70294, Vanderwaltozyma polyspora DSM 70294, Vanderwaltozyma polyspora DSMZ 70294

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Kpol_1002p111	Kpol_461p19	A7TEE0	A7TR55	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Uncharacterized protein.	0.874
Kpol_1002p39	Kpol_1019p30	A7TE70	A7TPC2	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	WD_REPEATS_REGION domain-containing protein.	0.990
Kpol_1002p39	Kpol_2001p63	A7TE70	A7TGU4	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	WD_REPEATS_REGION domain-containing protein.	0.990
Kpol_1002p53	Kpol_1033p51	A7TE84	A7TJ46	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.902
Kpol_1019p30	Kpol_1002p39	A7TPC2	A7TE70	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.990
Kpol_1019p30	Kpol_2001p63	A7TPC2	A7TGU4	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.905
Kpol_1033p51	Kpol_1002p53	A7TJ46	A7TE84	Protein kinase domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.902
Kpol_1070p32	Kpol_461p19	A7TNN2	A7TR55	cAMP-dependent protein kinase regulatory subunit.	Uncharacterized protein.	0.454
Kpol_2001p63	Kpol_1002p39	A7TGU4	A7TE70	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.990
Kpol_2001p63	Kpol_1019p30	A7TGU4	A7TPC2	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.905
Kpol_461p19	Kpol_1002p111	A7TR55	A7TEE0	Uncharacterized protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.874
Kpol_461p19	Kpol_1070p32	A7TR55	A7TNN2	Uncharacterized protein.	cAMP-dependent protein kinase regulatory subunit.	0.454