(21 nodes) U2-type prespliceosome network (Vanderwaltozyma polyspora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Kpol_224p1	Uncharacterized protein. (217 aa)
	Kpol_1002p44	Uncharacterized protein. (236 aa)
	Kpol_2001p62	Uncharacterized protein. (374 aa)
	Kpol_1032p19	U1-type domain-containing protein. (261 aa)
	Kpol_1013p29	Uncharacterized protein. (634 aa)
	Kpol_1039p50	RRM domain-containing protein. (296 aa)
	Kpol_1031p59	Uncharacterized protein. (538 aa)
	Kpol_1010p8	PSP domain-containing protein. (473 aa)
	Kpol_1043p6	Uncharacterized protein. (250 aa)
	SNU71	U1 small nuclear ribonucleoprotein component SNU71; Component of the U1 snRNP particle, which recognizes and binds the 5'-splice site of pre-mRNA. Together with other non-snRNP factors, U1 snRNP forms the spliceosomal commitment complex, that targets pre-mRNA to the splicing pathway (By similarity). (636 aa)
	Kpol_1066p5	Uncharacterized protein. (497 aa)
	Kpol_1059p7	CPSF_A domain-containing protein. (1346 aa)
	Kpol_1067p8	Uncharacterized protein. (955 aa)
	Kpol_480p15	Uncharacterized protein. (207 aa)
	Kpol_1009p11	Matrin-type domain-containing protein. (171 aa)
	Kpol_1073p4	Uncharacterized protein. (530 aa)
	Kpol_479p26	Matrin-type domain-containing protein. (517 aa)
	Kpol_1011p12	Small nuclear ribonucleoprotein G. (76 aa)
	Kpol_423p14	Sm domain-containing protein. (175 aa)
	Kpol_322p1	RRM domain-containing protein. (87 aa)
	Kpol_259p1	RRM domain-containing protein. (332 aa)

Your Current Organism:

Vanderwaltozyma polyspora

NCBI taxonomy Id: 436907
Other names: V. polyspora DSM 70294, Vanderwaltozyma polyspora DSM 70294, Vanderwaltozyma polyspora DSMZ 70294

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Kpol_1002p44	Kpol_1009p11	A7TE75	A7TPD7	Uncharacterized protein.	Matrin-type domain-containing protein.	0.995
Kpol_1002p44	Kpol_1010p8	A7TE75	A7TIF6	Uncharacterized protein.	PSP domain-containing protein.	0.996
Kpol_1002p44	Kpol_1011p12	A7TE75	A7TQW8	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.997
Kpol_1002p44	Kpol_1013p29	A7TE75	A7TH77	Uncharacterized protein.	Uncharacterized protein.	0.993
Kpol_1002p44	Kpol_1031p59	A7TE75	A7THZ0	Uncharacterized protein.	Uncharacterized protein.	0.986
Kpol_1002p44	Kpol_1032p19	A7TE75	A7TGX4	Uncharacterized protein.	U1-type domain-containing protein.	0.996
Kpol_1002p44	Kpol_1039p50	A7TE75	A7THH5	Uncharacterized protein.	RRM domain-containing protein.	0.984
Kpol_1002p44	Kpol_1043p6	A7TE75	A7TIM4	Uncharacterized protein.	Uncharacterized protein.	0.986
Kpol_1002p44	Kpol_1059p7	A7TE75	A7TN11	Uncharacterized protein.	CPSF_A domain-containing protein.	0.997
Kpol_1002p44	Kpol_1066p5	A7TE75	A7TMM7	Uncharacterized protein.	Uncharacterized protein.	0.981
Kpol_1002p44	Kpol_1067p8	A7TE75	A7TNV3	Uncharacterized protein.	Uncharacterized protein.	0.997
Kpol_1002p44	Kpol_1073p4	A7TE75	A7TPR7	Uncharacterized protein.	Uncharacterized protein.	0.981
Kpol_1002p44	Kpol_2001p62	A7TE75	A7TGU3	Uncharacterized protein.	Uncharacterized protein.	0.997
Kpol_1002p44	Kpol_224p1	A7TE75	A7TTG1	Uncharacterized protein.	Uncharacterized protein.	0.996
Kpol_1002p44	Kpol_259p1	A7TE75	A7TT64	Uncharacterized protein.	RRM domain-containing protein.	0.994
Kpol_1002p44	Kpol_322p1	A7TE75	A7TSX5	Uncharacterized protein.	RRM domain-containing protein.	0.999
Kpol_1002p44	Kpol_423p14	A7TE75	A7TR91	Uncharacterized protein.	Sm domain-containing protein.	0.997
Kpol_1002p44	Kpol_479p26	A7TE75	A7TQD9	Uncharacterized protein.	Matrin-type domain-containing protein.	0.998
Kpol_1002p44	Kpol_480p15	A7TE75	A7TP77	Uncharacterized protein.	Uncharacterized protein.	0.979
Kpol_1002p44	SNU71	A7TE75	A7TK94	Uncharacterized protein.	U1 small nuclear ribonucleoprotein component SNU71; Component of the U1 snRNP particle, which recognizes and binds the 5'-splice site of pre-mRNA. Together with other non-snRNP factors, U1 snRNP forms the spliceosomal commitment complex, that targets pre-mRNA to the splicing pathway (By similarity).	0.990