STRINGSTRING
Kpol_1011p12 Kpol_1011p12 Kpol_1009p2 Kpol_1009p2 Kpol_1036p91 Kpol_1036p91 Kpol_218p3 Kpol_218p3 Kpol_423p14 Kpol_423p14 Kpol_1013p34 Kpol_1013p34 Kpol_1048p2 Kpol_1048p2 Kpol_1001p16 Kpol_1001p16 Kpol_1053p22 Kpol_1053p22 Kpol_1030p16 Kpol_1030p16 LSM5 LSM5 LSM6 LSM6 LSM8 LSM8 LSM4 LSM4 LSM1 LSM1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Kpol_1011p12Small nuclear ribonucleoprotein G. (76 aa)
Kpol_1009p2Small nuclear ribonucleoprotein Sm D2. (109 aa)
Kpol_1036p91Small nuclear ribonucleoprotein Sm D3. (100 aa)
Kpol_218p3Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (93 aa)
Kpol_423p14Sm domain-containing protein. (175 aa)
Kpol_1013p34Sm domain-containing protein. (84 aa)
Kpol_1048p2Sm domain-containing protein. (126 aa)
Kpol_1001p16Sm domain-containing protein. (85 aa)
Kpol_1053p22U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
Kpol_1030p16Sm domain-containing protein. (92 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (86 aa)
LSM6U6 snRNA-associated Sm-like protein LSm6; Component of LSm protein complexes, which are involved in RNA processing and may function in a chaperone-like manner, facilitating the efficient association of RNA processing factors with their substrates. Component of the cytoplasmic LSM1-LSM7 complex, which is thought to be involved in mRNA degradation by activating the decapping step in the 5'-to-3' mRNA decay pathway. Component of the nuclear LSM2- LSM8 complex, which is involved in splicing of nuclear mRNAs. LSM2-LSM8 associates with multiple snRNP complexes containing the U6 snRNA (U4/U6 [...] (83 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (109 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (193 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (177 aa)
Your Current Organism:
Vanderwaltozyma polyspora
NCBI taxonomy Id: 436907
Other names: V. polyspora DSM 70294, Vanderwaltozyma polyspora DSM 70294, Vanderwaltozyma polyspora DSMZ 70294
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