(15 nodes) Mitotic Spindle Checkpoint network (Vanderwaltozyma polyspora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Kpol_1033p33	Uncharacterized protein. (578 aa)
	Kpol_1018p67	WD_REPEATS_REGION domain-containing protein. (326 aa)
	Kpol_1002p64	Uncharacterized protein. (657 aa)
	Kpol_1002p101	WD_REPEATS_REGION domain-containing protein. (636 aa)
	Kpol_2000p75	Uncharacterized protein. (236 aa)
	Kpol_2002p41	CAP-Gly domain-containing protein. (439 aa)
	Kpol_1032p20	Uncharacterized protein. (467 aa)
	Kpol_1010p46	Uncharacterized protein. (854 aa)
	Kpol_1004p17	HORMA domain-containing protein. (196 aa)
	Kpol_538p20	Uncharacterized protein. (992 aa)
	Kpol_1066p52	Uncharacterized protein. (680 aa)
	Kpol_489p8	DUF5595 domain-containing protein. (705 aa)
	Kpol_423p8	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (806 aa)
	Kpol_401p2	Uncharacterized protein. (327 aa)
	Kpol_385p6	RanBD1 domain-containing protein. (699 aa)

Your Current Organism:

Vanderwaltozyma polyspora

NCBI taxonomy Id: 436907
Other names: V. polyspora DSM 70294, Vanderwaltozyma polyspora DSM 70294, Vanderwaltozyma polyspora DSMZ 70294

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Kpol_1002p101	Kpol_1002p64	A7TED1	A7TE95	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.991
Kpol_1002p101	Kpol_1004p17	A7TED1	A7TJ74	WD_REPEATS_REGION domain-containing protein.	HORMA domain-containing protein.	0.997
Kpol_1002p101	Kpol_1010p46	A7TED1	A7TIJ2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.621
Kpol_1002p101	Kpol_1018p67	A7TED1	A7TDR5	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.994
Kpol_1002p101	Kpol_1032p20	A7TED1	A7TGX5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.651
Kpol_1002p101	Kpol_1033p33	A7TED1	A7TJ29	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.981
Kpol_1002p101	Kpol_1066p52	A7TED1	A7TMS0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.846
Kpol_1002p101	Kpol_2000p75	A7TED1	A7TF82	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.555
Kpol_1002p101	Kpol_2002p41	A7TED1	A7TFF7	WD_REPEATS_REGION domain-containing protein.	CAP-Gly domain-containing protein.	0.591
Kpol_1002p101	Kpol_385p6	A7TED1	A7TS18	WD_REPEATS_REGION domain-containing protein.	RanBD1 domain-containing protein.	0.685
Kpol_1002p101	Kpol_401p2	A7TED1	A7TRA1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.618
Kpol_1002p101	Kpol_423p8	A7TED1	A7TR85	WD_REPEATS_REGION domain-containing protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.676
Kpol_1002p101	Kpol_489p8	A7TED1	A7TQ22	WD_REPEATS_REGION domain-containing protein.	DUF5595 domain-containing protein.	0.700
Kpol_1002p101	Kpol_538p20	A7TED1	A7TKD3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.996
Kpol_1002p64	Kpol_1002p101	A7TE95	A7TED1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.991
Kpol_1002p64	Kpol_1004p17	A7TE95	A7TJ74	Uncharacterized protein.	HORMA domain-containing protein.	0.999
Kpol_1002p64	Kpol_1018p67	A7TE95	A7TDR5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.880
Kpol_1002p64	Kpol_1033p33	A7TE95	A7TJ29	Uncharacterized protein.	Uncharacterized protein.	0.900
Kpol_1002p64	Kpol_401p2	A7TE95	A7TRA1	Uncharacterized protein.	Uncharacterized protein.	0.444
Kpol_1002p64	Kpol_538p20	A7TE95	A7TKD3	Uncharacterized protein.	Uncharacterized protein.	0.976