(5 nodes) Conserved DNA-binding domain that is found in a wide range of proteins of large bacterial and eukaryotic DNA viruses. network (Vanderwaltozyma polyspora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Kpol_1045p30	Uncharacterized protein. (916 aa)
	Kpol_483p6	Uncharacterized protein. (789 aa)
	Kpol_460p25	HTH APSES-type domain-containing protein. (207 aa)
	Kpol_1018p105	Uncharacterized protein. (1048 aa)
	Kpol_1056p8	HTH APSES-type domain-containing protein. (523 aa)

Your Current Organism:

Vanderwaltozyma polyspora

NCBI taxonomy Id: 436907
Other names: V. polyspora DSM 70294, Vanderwaltozyma polyspora DSM 70294, Vanderwaltozyma polyspora DSMZ 70294

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Kpol_1018p105	Kpol_1045p30	A7TDV2	A7TI37	Uncharacterized protein.	Uncharacterized protein.	0.900
Kpol_1018p105	Kpol_483p6	A7TDV2	A7TQ58	Uncharacterized protein.	Uncharacterized protein.	0.816
Kpol_1045p30	Kpol_1018p105	A7TI37	A7TDV2	Uncharacterized protein.	Uncharacterized protein.	0.900
Kpol_1045p30	Kpol_483p6	A7TI37	A7TQ58	Uncharacterized protein.	Uncharacterized protein.	0.816
Kpol_1056p8	Kpol_460p25	A7TLL6	A7TQU1	HTH APSES-type domain-containing protein.	HTH APSES-type domain-containing protein.	0.904
Kpol_460p25	Kpol_1056p8	A7TQU1	A7TLL6	HTH APSES-type domain-containing protein.	HTH APSES-type domain-containing protein.	0.904
Kpol_483p6	Kpol_1018p105	A7TQ58	A7TDV2	Uncharacterized protein.	Uncharacterized protein.	0.816
Kpol_483p6	Kpol_1045p30	A7TQ58	A7TI37	Uncharacterized protein.	Uncharacterized protein.	0.816