(19 nodes) DDE transposase retroviral integrase sub-family network (Vanderwaltozyma polyspora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Kpol_298p3	Tkp3 protein. (1667 aa)
	Kpol_260p1	Tkp3 protein. (370 aa)
	Kpol_377p2	Tkp5 protein. (1099 aa)
	Kpol_464p1	Tkp5 protein. (1179 aa)
	Kpol_1031p4	Tkp3 protein. (1063 aa)
	Kpol_1031p7	Tkp3 protein. (1665 aa)
	Kpol_1054p12	Integrase catalytic domain-containing protein. (300 aa)
	Kpol_1037p34	Tkp1 protein. (1295 aa)
	Kpol_1035p3	Tkp3 protein. (1130 aa)
	Kpol_1066p30	Tkp1 protein. (262 aa)
	Kpol_1026p3	Tkp4 protein. (154 aa)
	Kpol_2000p35	Tkp3 protein. (704 aa)
	Kpol_1036p101	Tkp3 protein. (171 aa)
	Kpol_1018p175	Tkp5 protein. (816 aa)
	Kpol_1048p75	Tkp3 protein. (1233 aa)
	Kpol_455p14	Tkp5 protein. (278 aa)
	Kpol_414p5	Tkp4 protein. (1289 aa)
	Kpol_462p1	Tkp5 protein. (1726 aa)
	Kpol_381p1	Tkp5 protein. (1197 aa)

Your Current Organism:

Vanderwaltozyma polyspora

NCBI taxonomy Id: 436907
Other names: V. polyspora DSM 70294, Vanderwaltozyma polyspora DSM 70294, Vanderwaltozyma polyspora DSMZ 70294

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Kpol_1018p175	Kpol_1066p30	A7TE15	A7TMQ0	Tkp5 protein.	Tkp1 protein.	0.539
Kpol_1026p3	Kpol_455p14	A7TNH4	A7TR35	Tkp4 protein.	Tkp5 protein.	0.469
Kpol_1026p3	Kpol_464p1	A7TNH4	A7TTN5	Tkp4 protein.	Tkp5 protein.	0.424
Kpol_1031p4	Kpol_1054p12	A7THT9	A7TIA0	Tkp3 protein.	Integrase catalytic domain-containing protein.	0.453
Kpol_1036p101	Kpol_1054p12	A7TEP6	A7TIA0	Tkp3 protein.	Integrase catalytic domain-containing protein.	0.429
Kpol_1048p75	Kpol_1054p12	A7TGN7	A7TIA0	Tkp3 protein.	Integrase catalytic domain-containing protein.	0.452
Kpol_1048p75	Kpol_260p1	A7TGN7	A7TTF2	Tkp3 protein.	Tkp3 protein.	0.400
Kpol_1054p12	Kpol_1031p4	A7TIA0	A7THT9	Integrase catalytic domain-containing protein.	Tkp3 protein.	0.453
Kpol_1054p12	Kpol_1036p101	A7TIA0	A7TEP6	Integrase catalytic domain-containing protein.	Tkp3 protein.	0.429
Kpol_1054p12	Kpol_1048p75	A7TIA0	A7TGN7	Integrase catalytic domain-containing protein.	Tkp3 protein.	0.452
Kpol_1054p12	Kpol_260p1	A7TIA0	A7TTF2	Integrase catalytic domain-containing protein.	Tkp3 protein.	0.481
Kpol_1066p30	Kpol_1018p175	A7TMQ0	A7TE15	Tkp1 protein.	Tkp5 protein.	0.539
Kpol_1066p30	Kpol_455p14	A7TMQ0	A7TR35	Tkp1 protein.	Tkp5 protein.	0.540
Kpol_1066p30	Kpol_462p1	A7TMQ0	A7TSE4	Tkp1 protein.	Tkp5 protein.	0.532
Kpol_1066p30	Kpol_464p1	A7TMQ0	A7TTN5	Tkp1 protein.	Tkp5 protein.	0.532
Kpol_260p1	Kpol_1048p75	A7TTF2	A7TGN7	Tkp3 protein.	Tkp3 protein.	0.400
Kpol_260p1	Kpol_1054p12	A7TTF2	A7TIA0	Tkp3 protein.	Integrase catalytic domain-containing protein.	0.481
Kpol_455p14	Kpol_1026p3	A7TR35	A7TNH4	Tkp5 protein.	Tkp4 protein.	0.469
Kpol_455p14	Kpol_1066p30	A7TR35	A7TMQ0	Tkp5 protein.	Tkp1 protein.	0.540
Kpol_462p1	Kpol_1066p30	A7TSE4	A7TMQ0	Tkp5 protein.	Tkp1 protein.	0.532