(6 nodes) MAD homology, MH1, and c-SKI SMAD4-binding domain network (Monopterus albus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	smad3	Mothers against decapentaplegic homolog. (425 aa)
	SMAD3	Mothers against decapentaplegic homolog. (425 aa)
	ENSMALP00000022575	MH1 domain-containing protein. (101 aa)
	skil	SKI-like proto-oncogene a. (776 aa)
	ski	V-ski avian sarcoma viral oncogene homolog a. (727 aa)
	LOC109974571	Mothers against decapentaplegic homolog. (566 aa)

Your Current Organism:

Monopterus albus

NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMALP00000022575	SMAD3	ENSMALP00000022575	ENSMALP00000018673	MH1 domain-containing protein.	Mothers against decapentaplegic homolog.	0.977
ENSMALP00000022575	ski	ENSMALP00000022575	ENSMALP00000027410	MH1 domain-containing protein.	V-ski avian sarcoma viral oncogene homolog a.	0.905
ENSMALP00000022575	skil	ENSMALP00000022575	ENSMALP00000027103	MH1 domain-containing protein.	SKI-like proto-oncogene a.	0.832
ENSMALP00000022575	smad3	ENSMALP00000022575	ENSMALP00000010530	MH1 domain-containing protein.	Mothers against decapentaplegic homolog.	0.977
LOC109974571	SMAD3	ENSMALP00000027982	ENSMALP00000018673	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.976
LOC109974571	ski	ENSMALP00000027982	ENSMALP00000027410	Mothers against decapentaplegic homolog.	V-ski avian sarcoma viral oncogene homolog a.	0.905
LOC109974571	skil	ENSMALP00000027982	ENSMALP00000027103	Mothers against decapentaplegic homolog.	SKI-like proto-oncogene a.	0.832
LOC109974571	smad3	ENSMALP00000027982	ENSMALP00000010530	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.976
SMAD3	ENSMALP00000022575	ENSMALP00000018673	ENSMALP00000022575	Mothers against decapentaplegic homolog.	MH1 domain-containing protein.	0.977
SMAD3	LOC109974571	ENSMALP00000018673	ENSMALP00000027982	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.976
SMAD3	ski	ENSMALP00000018673	ENSMALP00000027410	Mothers against decapentaplegic homolog.	V-ski avian sarcoma viral oncogene homolog a.	0.882
SMAD3	skil	ENSMALP00000018673	ENSMALP00000027103	Mothers against decapentaplegic homolog.	SKI-like proto-oncogene a.	0.812
SMAD3	smad3	ENSMALP00000018673	ENSMALP00000010530	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.900
ski	ENSMALP00000022575	ENSMALP00000027410	ENSMALP00000022575	V-ski avian sarcoma viral oncogene homolog a.	MH1 domain-containing protein.	0.905
ski	LOC109974571	ENSMALP00000027410	ENSMALP00000027982	V-ski avian sarcoma viral oncogene homolog a.	Mothers against decapentaplegic homolog.	0.905
ski	SMAD3	ENSMALP00000027410	ENSMALP00000018673	V-ski avian sarcoma viral oncogene homolog a.	Mothers against decapentaplegic homolog.	0.882
ski	skil	ENSMALP00000027410	ENSMALP00000027103	V-ski avian sarcoma viral oncogene homolog a.	SKI-like proto-oncogene a.	0.693
ski	smad3	ENSMALP00000027410	ENSMALP00000010530	V-ski avian sarcoma viral oncogene homolog a.	Mothers against decapentaplegic homolog.	0.882
skil	ENSMALP00000022575	ENSMALP00000027103	ENSMALP00000022575	SKI-like proto-oncogene a.	MH1 domain-containing protein.	0.832
skil	LOC109974571	ENSMALP00000027103	ENSMALP00000027982	SKI-like proto-oncogene a.	Mothers against decapentaplegic homolog.	0.832