STRINGSTRING
sf3a1 sf3a1 prpf6 prpf6 snrpc snrpc snrnp200 snrnp200 SNRPG SNRPG LOC109964751 LOC109964751 prpf8 prpf8 sf3a3 sf3a3 spaca6 spaca6 sf3b4 sf3b4 ENSMALP00000009004 ENSMALP00000009004 snrpb2 snrpb2 ddx42 ddx42 sf3b3 sf3b3 phf5a phf5a prpf31 prpf31 snrpd2 snrpd2 Snrpf Snrpf snrpa snrpa LSM10 LSM10 snrpd3 snrpd3 snrpe snrpe snrpd1 snrpd1 eftud2 eftud2 sf3b2 sf3b2 snrpa1 snrpa1 snrnp40 snrnp40 ddx46 ddx46 sf3b1 sf3b1 txnl4a txnl4a sart1 sart1 sf3b6 sf3b6 Sf3b5 Sf3b5 sf3a2 sf3a2 LOC109966897 LOC109966897 ddx23 ddx23
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sf3a1Splicing factor 3a, subunit 1. (787 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (923 aa)
snrpcU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (147 aa)
snrnp200Small nuclear ribonucleoprotein 200 (U5). (2136 aa)
SNRPGSmall nuclear ribonucleoprotein G. (72 aa)
LOC109964751Small nuclear ribonucleoprotein 70 (U1). (509 aa)
prpf8Pre-mRNA processing factor 8. (2244 aa)
sf3a3Splicing factor 3a, subunit 3. (501 aa)
spaca6Ig-like domain-containing protein. (353 aa)
sf3b4Splicing factor 3b, subunit 4. (402 aa)
ENSMALP00000009004Sm domain-containing protein. (59 aa)
snrpb2Small nuclear ribonucleoprotein polypeptide B2. (221 aa)
ddx42DEAD (Asp-Glu-Ala-Asp) box helicase 42. (902 aa)
sf3b3Splicing factor 3b, subunit 3. (1217 aa)
phf5aPHD finger protein 5A. (110 aa)
prpf31PRP31 pre-mRNA processing factor 31 homolog (yeast). (497 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
SnrpfSmall nuclear ribonucleoprotein polypeptide F. (85 aa)
snrpaSmall nuclear ribonucleoprotein polypeptide A. (278 aa)
LSM10LSM10, U7 small nuclear RNA associated. (127 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (71 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
eftud2Elongation factor Tu GTP binding domain containing 2. (838 aa)
sf3b2Splicing factor 3b, subunit 2. (847 aa)
snrpa1Small nuclear ribonucleoprotein polypeptide A. (284 aa)
snrnp40Small nuclear ribonucleoprotein 40 (U5). (335 aa)
ddx46DEAD (Asp-Glu-Ala-Asp) box polypeptide 46. (1062 aa)
sf3b1Splicing factor 3b, subunit 1. (1314 aa)
txnl4aThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
sart1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (773 aa)
sf3b6Splicing factor 3b, subunit 6. (186 aa)
Sf3b5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (82 aa)
sf3a2Splicing factor 3a, subunit 2. (296 aa)
LOC109966897Small nuclear ribonucleoprotein polypeptides B and B1. (296 aa)
ddx23DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (804 aa)
Your Current Organism:
Monopterus albus
NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.