(12 nodes) Platelet formation network (Monopterus albus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nbeal2	Neurobeachin-like 2. (2808 aa)
	vps33a	VPS33A core subunit of CORVET and HOPS complexes; Belongs to the STXBP/unc-18/SEC1 family. (600 aa)
	LOC109971761	MADS-box domain-containing protein. (516 aa)
	LOC109956110	GATA binding protein 1a. (422 aa)
	SRF	Serum response factor. (526 aa)
	LOC109967179	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (593 aa)
	LOC109955632	Neurobeachin-like 1. (2661 aa)
	ep300	E1A binding protein p300 b. (2602 aa)
	LOC109952679	E1A binding protein p300 a. (2513 aa)
	ptpn11	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (596 aa)
	cib1	Calcium and integrin binding 1 (calmyrin). (189 aa)
	ptpn6	Protein tyrosine phosphatase non-receptor type 6. (580 aa)

Your Current Organism:

Monopterus albus

NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC109952679	LOC109956110	ENSMALP00000020120	ENSMALP00000008527	E1A binding protein p300 a.	GATA binding protein 1a.	0.756
LOC109956110	LOC109952679	ENSMALP00000008527	ENSMALP00000020120	GATA binding protein 1a.	E1A binding protein p300 a.	0.756
LOC109956110	ep300	ENSMALP00000008527	ENSMALP00000018597	GATA binding protein 1a.	E1A binding protein p300 b.	0.756
LOC109967179	ptpn11	ENSMALP00000010217	ENSMALP00000027095	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.901
LOC109971761	SRF	ENSMALP00000005652	ENSMALP00000008997	MADS-box domain-containing protein.	Serum response factor.	0.903
SRF	LOC109971761	ENSMALP00000008997	ENSMALP00000005652	Serum response factor.	MADS-box domain-containing protein.	0.903
ep300	LOC109956110	ENSMALP00000018597	ENSMALP00000008527	E1A binding protein p300 b.	GATA binding protein 1a.	0.756
ptpn11	LOC109967179	ENSMALP00000027095	ENSMALP00000010217	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.901