(19 nodes) P-body assembly network (Monopterus albus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rc3h1	Ring finger and CCCH-type domains 1b. (1141 aa)
	LOC109957729	Ring finger and CCCH-type domains 1b. (452 aa)
	lsm4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (143 aa)
	noct	Nocturnin. (471 aa)
	ENSMALP00000007142	Uncharacterized protein. (154 aa)
	lsm3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	patl2	PAT1 homolog 2. (743 aa)
	edc3	Enhancer of mRNA decapping 3 homolog (S. cerevisiae). (478 aa)
	ddx6	DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family. (469 aa)
	cunh19orf54	Zgc:153119. (310 aa)
	atxn2	Ataxin 2. (1036 aa)
	LOC109958632	Uncharacterized protein; Belongs to the DEAD box helicase family. (489 aa)
	patl1	PAT1 homolog 1, processing body mRNA decay factor. (676 aa)
	EIF4ENIF1	Eukaryotic translation initiation factor 4E nuclear import factor 1. (959 aa)
	LOC109954660	DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family. (462 aa)
	lsm14a	LSM14A mRNA processing body assembly factor b. (443 aa)
	LOC109957867	Nocturnin. (363 aa)
	LOC109969089	LSM14A mRNA processing body assembly factor a. (545 aa)
	ENSMALP00000020889	YjeF N-terminal domain-containing protein. (303 aa)

Your Current Organism:

Monopterus albus

NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIF4ENIF1	LOC109954660	ENSMALP00000030585	ENSMALP00000019750	Eukaryotic translation initiation factor 4E nuclear import factor 1.	DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.	0.525
EIF4ENIF1	LOC109958632	ENSMALP00000030585	ENSMALP00000019834	Eukaryotic translation initiation factor 4E nuclear import factor 1.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.937
EIF4ENIF1	LOC109969089	ENSMALP00000030585	ENSMALP00000020760	Eukaryotic translation initiation factor 4E nuclear import factor 1.	LSM14A mRNA processing body assembly factor a.	0.881
EIF4ENIF1	ddx6	ENSMALP00000030585	ENSMALP00000013170	Eukaryotic translation initiation factor 4E nuclear import factor 1.	DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.	0.937
EIF4ENIF1	lsm14a	ENSMALP00000030585	ENSMALP00000020339	Eukaryotic translation initiation factor 4E nuclear import factor 1.	LSM14A mRNA processing body assembly factor b.	0.881
EIF4ENIF1	patl1	ENSMALP00000030585	ENSMALP00000027000	Eukaryotic translation initiation factor 4E nuclear import factor 1.	PAT1 homolog 1, processing body mRNA decay factor.	0.445
EIF4ENIF1	patl2	ENSMALP00000030585	ENSMALP00000011420	Eukaryotic translation initiation factor 4E nuclear import factor 1.	PAT1 homolog 2.	0.445
ENSMALP00000007142	LOC109954660	ENSMALP00000007142	ENSMALP00000019750	Uncharacterized protein.	DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.	0.614
ENSMALP00000007142	LOC109958632	ENSMALP00000007142	ENSMALP00000019834	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.674
ENSMALP00000007142	ddx6	ENSMALP00000007142	ENSMALP00000013170	Uncharacterized protein.	DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.	0.674
ENSMALP00000007142	patl1	ENSMALP00000007142	ENSMALP00000027000	Uncharacterized protein.	PAT1 homolog 1, processing body mRNA decay factor.	0.744
ENSMALP00000007142	patl2	ENSMALP00000007142	ENSMALP00000011420	Uncharacterized protein.	PAT1 homolog 2.	0.588
ENSMALP00000020889	LOC109954660	ENSMALP00000020889	ENSMALP00000019750	YjeF N-terminal domain-containing protein.	DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family.	0.806
ENSMALP00000020889	LOC109958632	ENSMALP00000020889	ENSMALP00000019834	YjeF N-terminal domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.939
ENSMALP00000020889	LOC109969089	ENSMALP00000020889	ENSMALP00000020760	YjeF N-terminal domain-containing protein.	LSM14A mRNA processing body assembly factor a.	0.691
ENSMALP00000020889	cunh19orf54	ENSMALP00000020889	ENSMALP00000017868	YjeF N-terminal domain-containing protein.	Zgc:153119.	0.724
ENSMALP00000020889	ddx6	ENSMALP00000020889	ENSMALP00000013170	YjeF N-terminal domain-containing protein.	DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.	0.939
ENSMALP00000020889	lsm14a	ENSMALP00000020889	ENSMALP00000020339	YjeF N-terminal domain-containing protein.	LSM14A mRNA processing body assembly factor b.	0.691
ENSMALP00000020889	lsm3	ENSMALP00000020889	ENSMALP00000009110	YjeF N-terminal domain-containing protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.724
ENSMALP00000020889	lsm4	ENSMALP00000020889	ENSMALP00000026148	YjeF N-terminal domain-containing protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.864