18 items (Monopterus albus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	vcl	Vinculin b. (1066 aa)
	ASTN2	Astrotactin 2. (1230 aa)
	LOC109963620	RIC3 acetylcholine receptor chaperone. (479 aa)
	unc50	Unc-50 homolog (C. elegans). (257 aa)
	ARF6	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family. (180 aa)
	LOC109961177	Vinculin a. (1134 aa)
	Pigk	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family. (274 aa)
	fgf7	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (202 aa)
	LOC109956398	RIC3 domain-containing protein. (377 aa)
	pigu	Phosphatidylinositol glycan anchor biosynthesis, class U. (435 aa)
	prrt1	Proline-rich transmembrane protein 1. (223 aa)
	LOC109953237	Uncharacterized protein. (617 aa)
	ENSMALP00000009480	ADP-ribosylation factor 6b. (112 aa)
	ENSMALP00000006018	Si:ch73-343g19.4. (100 aa)
	wnt11	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (357 aa)
	LOC109957877	Uncharacterized protein. (637 aa)
	GGA1	Golgi associated, gamma adaptin ear containing, ARF binding protein 1. (658 aa)
	gga3	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a. (779 aa)

Your Current Organism:

Monopterus albus

NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARF6	gga3	ENSMALP00000024846	ENSMALP00000032852	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a.	0.887
ENSMALP00000009480	gga3	ENSMALP00000009480	ENSMALP00000032852	ADP-ribosylation factor 6b.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a.	0.887
GGA1	gga3	ENSMALP00000001854	ENSMALP00000032852	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a.	0.425
LOC109953237	gga3	ENSMALP00000013037	ENSMALP00000032852	Uncharacterized protein.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a.	0.443
LOC109956398	unc50	ENSMALP00000016994	ENSMALP00000025639	RIC3 domain-containing protein.	Unc-50 homolog (C. elegans).	0.700
LOC109957877	gga3	ENSMALP00000003346	ENSMALP00000032852	Uncharacterized protein.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a.	0.429
LOC109961177	vcl	ENSMALP00000022035	ENSMALP00000032579	Vinculin a.	Vinculin b.	0.900
LOC109963620	unc50	ENSMALP00000028587	ENSMALP00000025639	RIC3 acetylcholine receptor chaperone.	Unc-50 homolog (C. elegans).	0.686
Pigk	pigu	ENSMALP00000021397	ENSMALP00000015431	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	Phosphatidylinositol glycan anchor biosynthesis, class U.	0.999
gga3	ARF6	ENSMALP00000032852	ENSMALP00000024846	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a.	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	0.887
gga3	ENSMALP00000009480	ENSMALP00000032852	ENSMALP00000009480	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a.	ADP-ribosylation factor 6b.	0.887
gga3	GGA1	ENSMALP00000032852	ENSMALP00000001854	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a.	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	0.425
gga3	LOC109953237	ENSMALP00000032852	ENSMALP00000013037	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a.	Uncharacterized protein.	0.443
gga3	LOC109957877	ENSMALP00000032852	ENSMALP00000003346	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a.	Uncharacterized protein.	0.429
pigu	Pigk	ENSMALP00000015431	ENSMALP00000021397	Phosphatidylinositol glycan anchor biosynthesis, class U.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.999
unc50	LOC109956398	ENSMALP00000025639	ENSMALP00000016994	Unc-50 homolog (C. elegans).	RIC3 domain-containing protein.	0.700
unc50	LOC109963620	ENSMALP00000025639	ENSMALP00000028587	Unc-50 homolog (C. elegans).	RIC3 acetylcholine receptor chaperone.	0.686
vcl	LOC109961177	ENSMALP00000032579	ENSMALP00000022035	Vinculin b.	Vinculin a.	0.900