(14 nodes) Stress fiber assembly network (Monopterus albus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SRF	Serum response factor. (526 aa)
	CUL3	Cullin 3; Belongs to the cullin family. (706 aa)
	fam171a2	Family with sequence similarity 171 member A2b. (829 aa)
	LOC109957716	Phosphatase and actin regulator. (605 aa)
	LOC109967498	FH2 domain containing 4. (826 aa)
	LOC109966230	Zyxin. (526 aa)
	ENSMALP00000032419	Phosphatase and actin regulator. (131 aa)
	LOC109953536	FH2 domain-containing protein. (609 aa)
	ENSMALP00000000086	Phosphatase and actin regulator. (404 aa)
	fhdc1	FH2 domain containing 1. (1126 aa)
	fam171a1	Family with sequence similarity 171 member A1. (913 aa)
	LOC109970578	CULLIN_2 domain-containing protein; Belongs to the cullin family. (713 aa)
	LOC109971761	MADS-box domain-containing protein. (516 aa)
	LOC109968377	FH2 domain-containing protein. (1098 aa)

Your Current Organism:

Monopterus albus

NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUL3	LOC109970578	ENSMALP00000021376	ENSMALP00000003719	Cullin 3; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.900
ENSMALP00000000086	ENSMALP00000032419	ENSMALP00000000086	ENSMALP00000032419	Phosphatase and actin regulator.	Phosphatase and actin regulator.	0.899
ENSMALP00000032419	ENSMALP00000000086	ENSMALP00000032419	ENSMALP00000000086	Phosphatase and actin regulator.	Phosphatase and actin regulator.	0.899
LOC109970578	CUL3	ENSMALP00000003719	ENSMALP00000021376	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Cullin 3; Belongs to the cullin family.	0.900
LOC109971761	SRF	ENSMALP00000005652	ENSMALP00000008997	MADS-box domain-containing protein.	Serum response factor.	0.903
SRF	LOC109971761	ENSMALP00000008997	ENSMALP00000005652	Serum response factor.	MADS-box domain-containing protein.	0.903