22 items (Monopterus albus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	fnbp1l	Formin binding protein 1-like. (559 aa)
	LOC109971761	MADS-box domain-containing protein. (516 aa)
	ripor2	RHO family interacting cell polarization regulator 2. (1140 aa)
	LOC109968874	Uncharacterized protein. (226 aa)
	SRF	Serum response factor. (526 aa)
	agrn	Agrin. (2033 aa)
	LOC109963166	Selenoprotein W, 2b. (83 aa)
	myo3b	Myosin IIIB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1226 aa)
	nrp1	Neuropilin; Belongs to the neuropilin family. (917 aa)
	gpm6a	Glycoprotein M6Aa. (280 aa)
	tenm1	Teneurin transmembrane protein 1. (2760 aa)
	LOC109969613	Paralemmin 1b. (230 aa)
	myo3a	Myosin IIIA; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1795 aa)
	fmr1	Fragile X mental retardation 1. (603 aa)
	LOC109971977	Cell division cycle 42. (191 aa)
	CDC42	Cell division cycle 42. (191 aa)
	LOC109975009	Uncharacterized protein. (278 aa)
	bcas3	BCAS3 microtubule associated cell migration factor. (888 aa)
	LOC109960002	Dihydropyrimidinase like 3. (575 aa)
	ripor3	RIPOR family member 3. (913 aa)
	PALM	Paralemmin 1a. (394 aa)
	LOC109966191	Uncharacterized protein. (235 aa)

Your Current Organism:

Monopterus albus

NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC42	fnbp1l	ENSMALP00000019476	ENSMALP00000031408	Cell division cycle 42.	Formin binding protein 1-like.	0.772
LOC109960002	nrp1	ENSMALP00000024679	ENSMALP00000013625	Dihydropyrimidinase like 3.	Neuropilin; Belongs to the neuropilin family.	0.400
LOC109966191	fnbp1l	ENSMALP00000032699	ENSMALP00000031408	Uncharacterized protein.	Formin binding protein 1-like.	0.577
LOC109968874	fnbp1l	ENSMALP00000008243	ENSMALP00000031408	Uncharacterized protein.	Formin binding protein 1-like.	0.577
LOC109971761	SRF	ENSMALP00000005652	ENSMALP00000008997	MADS-box domain-containing protein.	Serum response factor.	0.903
LOC109971977	fnbp1l	ENSMALP00000019381	ENSMALP00000031408	Cell division cycle 42.	Formin binding protein 1-like.	0.772
SRF	LOC109971761	ENSMALP00000008997	ENSMALP00000005652	Serum response factor.	MADS-box domain-containing protein.	0.903
fnbp1l	CDC42	ENSMALP00000031408	ENSMALP00000019476	Formin binding protein 1-like.	Cell division cycle 42.	0.772
fnbp1l	LOC109966191	ENSMALP00000031408	ENSMALP00000032699	Formin binding protein 1-like.	Uncharacterized protein.	0.577
fnbp1l	LOC109968874	ENSMALP00000031408	ENSMALP00000008243	Formin binding protein 1-like.	Uncharacterized protein.	0.577
fnbp1l	LOC109971977	ENSMALP00000031408	ENSMALP00000019381	Formin binding protein 1-like.	Cell division cycle 42.	0.772
nrp1	LOC109960002	ENSMALP00000013625	ENSMALP00000024679	Neuropilin; Belongs to the neuropilin family.	Dihydropyrimidinase like 3.	0.400