11 items (Monopterus albus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109973557	Uncharacterized protein. (693 aa)
	fndc3a	Fibronectin type III domain containing 3A. (1188 aa)
	fndc3b	Fibronectin type III domain containing 3Ba. (1168 aa)
	LOC109974887	Collagen, type I, alpha 1b. (1254 aa)
	SRC	Tyrosine-protein kinase. (544 aa)
	LOC109957645	Reticulon 4 receptor-like 2b. (458 aa)
	LOC109970991	Tyrosine-protein kinase. (543 aa)
	LOC109951101	Collagen, type I, alpha 1a. (1252 aa)
	col1a2	Collagen, type I, alpha 2. (1292 aa)
	Gp1bb	LRRNT domain-containing protein. (90 aa)
	ENSMALP00000031772	Uncharacterized protein. (201 aa)

Your Current Organism:

Monopterus albus

NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMALP00000031772	Gp1bb	ENSMALP00000031772	ENSMALP00000029860	Uncharacterized protein.	LRRNT domain-containing protein.	0.905
ENSMALP00000031772	LOC109973557	ENSMALP00000031772	ENSMALP00000007888	Uncharacterized protein.	Uncharacterized protein.	0.681
Gp1bb	ENSMALP00000031772	ENSMALP00000029860	ENSMALP00000031772	LRRNT domain-containing protein.	Uncharacterized protein.	0.905
Gp1bb	LOC109973557	ENSMALP00000029860	ENSMALP00000007888	LRRNT domain-containing protein.	Uncharacterized protein.	0.497
LOC109951101	col1a2	ENSMALP00000027253	ENSMALP00000029093	Collagen, type I, alpha 1a.	Collagen, type I, alpha 2.	0.677
LOC109970991	SRC	ENSMALP00000027113	ENSMALP00000016910	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.900
LOC109973557	ENSMALP00000031772	ENSMALP00000007888	ENSMALP00000031772	Uncharacterized protein.	Uncharacterized protein.	0.681
LOC109973557	Gp1bb	ENSMALP00000007888	ENSMALP00000029860	Uncharacterized protein.	LRRNT domain-containing protein.	0.497
LOC109974887	col1a2	ENSMALP00000015761	ENSMALP00000029093	Collagen, type I, alpha 1b.	Collagen, type I, alpha 2.	0.645
SRC	LOC109970991	ENSMALP00000016910	ENSMALP00000027113	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.900
col1a2	LOC109951101	ENSMALP00000029093	ENSMALP00000027253	Collagen, type I, alpha 2.	Collagen, type I, alpha 1a.	0.677
col1a2	LOC109974887	ENSMALP00000029093	ENSMALP00000015761	Collagen, type I, alpha 2.	Collagen, type I, alpha 1b.	0.645