STRINGSTRING
Mre11 Mre11 LOC109967672 LOC109967672 pias4 pias4 ENSMALP00000011733 ENSMALP00000011733 mus81 mus81 ENSMALP00000011910 ENSMALP00000011910 slf1 slf1 ENSMALP00000012212 ENSMALP00000012212 rfc4 rfc4 ppp4r2 ppp4r2 cdca7 cdca7 ENSMALP00000013776 ENSMALP00000013776 Atm Atm tp53bp1 tp53bp1 polk polk rmi1 rmi1 rfc3 rfc3 rpa3 rpa3 ccna1 ccna1 xrcc1 xrcc1 rcbtb2 rcbtb2 LOC109966759 LOC109966759 rad51d rad51d lig3 lig3 ube2n ube2n atr atr rpa1 rpa1 ENSMALP00000016949 ENSMALP00000016949 rpa2 rpa2 top3a top3a pole pole ENSMALP00000019196 ENSMALP00000019196 rhno1 rhno1 hus1 hus1 rad9a rad9a pold4 pold4 ENSMALP00000020293 ENSMALP00000020293 parp2 parp2 pole2 pole2 ENSMALP00000020785 ENSMALP00000020785 rad51c rad51c rps27a rps27a ENSMALP00000021124 ENSMALP00000021124 xrcc3 xrcc3 tdrd3 tdrd3 Polh Polh LOC109959903 LOC109959903 ankrd12 ankrd12 ENSMALP00000023295 ENSMALP00000023295 cdca7l cdca7l LOC109957172 LOC109957172 LOC109967477 LOC109967477 LOC109967476 LOC109967476 pold3 pold3 ENSMALP00000024613 ENSMALP00000024613 parp3 parp3 kat5 kat5 rfc2 rfc2 LOC109968062 LOC109968062 cdk2 cdk2 timeless timeless uba52 uba52 meiob meiob Brca2 Brca2 ENSMALP00000026641 ENSMALP00000026641 rad50 rad50 palb2 palb2 pcna pcna Rnf168 Rnf168 rnf8 rnf8 rad1 rad1 LOC109957254 LOC109957254 pold1 pold1 uimc1 uimc1 babam1 babam1 rmi2 rmi2 SPIDR SPIDR ube2v2 ube2v2 exo1 exo1 sirt6 sirt6 LOC109957769 LOC109957769 LOC109960591 LOC109960591 brca1 brca1 exd2 exd2 LOC109952335 LOC109952335 mdc1 mdc1 LOC109966247 LOC109966247 atrip atrip Brcc3 Brcc3 EME2 EME2 ENSMALP00000001069 ENSMALP00000001069 RPA1 RPA1 pold2 pold2 gen1 gen1 fen1 fen1 ppp4c ppp4c ube2i ube2i ENSMALP00000003154 ENSMALP00000003154 pole3 pole3 LOC109969319 LOC109969319 ENSMALP00000004273 ENSMALP00000004273 rad9b rad9b tipin tipin nsd2 nsd2 parp1 parp1 RCBTB1 RCBTB1 ENSMALP00000006512 ENSMALP00000006512 kxd1 kxd1 Bre Bre LOC109963691 LOC109963691 rad52 rad52 rad51 rad51 rfc5 rfc5 sirt7 sirt7 dna2 dna2 sumo2 sumo2 LOC109974756 LOC109974756 ENSMALP00000009000 ENSMALP00000009000 topbp1 topbp1 ccna2 ccna2 rfc1 rfc1 LOC109959667 LOC109959667 chek1 chek1 blm blm ENSMALP00000010367 ENSMALP00000010367 rad17 rad17 LOC109974159 LOC109974159 LOC109972417 LOC109972417 LOC109955588 LOC109955588
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Mre11Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (569 aa)
LOC109967672Histone H2B; Belongs to the histone H2B family. (124 aa)
pias4Protein inhibitor of activated STAT, 4a. (481 aa)
ENSMALP00000011733Uncharacterized protein. (92 aa)
mus81MUS81 structure-specific endonuclease subunit. (616 aa)
ENSMALP00000011910Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (110 aa)
slf1SMC5-SMC6 complex localization factor 1. (873 aa)
ENSMALP00000012212Uncharacterized protein. (238 aa)
rfc4Replication factor C (activator 1) 4. (331 aa)
ppp4r2Protein phosphatase 4, regulatory subunit 2b. (403 aa)
cdca7Cell division cycle associated 7a. (409 aa)
ENSMALP00000013776TAN domain-containing protein. (131 aa)
AtmUncharacterized protein. (132 aa)
tp53bp1Tumor protein p53 binding protein, 1. (1501 aa)
polkPolymerase (DNA directed) kappa. (884 aa)
rmi1RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae). (708 aa)
rfc3Replication factor C (activator 1) 3. (356 aa)
rpa3Uncharacterized protein. (135 aa)
ccna1Cyclin A1; Belongs to the cyclin family. (416 aa)
xrcc1X-ray repair complementing defective repair in Chinese hamster cells 1. (627 aa)
rcbtb2Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (527 aa)
LOC109966759Uncharacterized protein. (400 aa)
rad51dRAD51 paralog D. (323 aa)
lig3DNA ligase. (1013 aa)
ube2nUbiquitin-conjugating enzyme E2Nb; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
atrATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family. (2613 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (599 aa)
ENSMALP00000016949Histone H2A; Belongs to the histone H2A family. (141 aa)
rpa2Replication protein A2. (278 aa)
top3aDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1078 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2210 aa)
ENSMALP00000019196RECA_2 domain-containing protein. (258 aa)
rhno1Si:ch73-352p4.5. (299 aa)
hus1Checkpoint protein; Belongs to the HUS1 family. (285 aa)
rad9aCell cycle checkpoint control protein; Belongs to the rad9 family. (395 aa)
pold4Si:dkey-28b4.7. (106 aa)
ENSMALP00000020293Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
parp2Poly [ADP-ribose] polymerase. (577 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (526 aa)
ENSMALP00000020785Histone H2B; Belongs to the histone H2B family. (115 aa)
rad51cRAD51 paralog C. (350 aa)
rps27aRibosomal protein S27a. (156 aa)
ENSMALP00000021124RAD51_interact domain-containing protein. (221 aa)
xrcc3DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions; Belongs to the RecA family. RAD51 subfamily. (341 aa)
tdrd3Tudor domain containing 3. (761 aa)
PolhPolymerase (DNA directed), eta. (297 aa)
LOC109959903UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (153 aa)
ankrd12ANK_REP_REGION domain-containing protein. (487 aa)
ENSMALP00000023295Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (92 aa)
cdca7lCell division cycle associated 7b. (397 aa)
LOC109957172Small ubiquitin-related modifier. (95 aa)
LOC109967477Polymerase (DNA-directed), epsilon 4, accessory subunit. (153 aa)
LOC109967476CBFD_NFYB_HMF domain-containing protein. (132 aa)
pold3Polymerase (DNA-directed), delta 3, accessory subunit. (435 aa)
ENSMALP00000024613Histone H2B; Belongs to the histone H2B family. (124 aa)
parp3Poly [ADP-ribose] polymerase. (513 aa)
kat5Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (565 aa)
rfc2Replication factor C (activator 1) 2. (357 aa)
LOC109968062Small ubiquitin-related modifier. (108 aa)
cdk2Cyclin-dependent kinase 2; Belongs to the protein kinase superfamily. (298 aa)
timelessTimeless circadian clock. (1175 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
meiobMethionine sulfoxide reductase B1b. (404 aa)
Brca2Uncharacterized protein. (1262 aa)
ENSMALP00000026641BRCA-2_OB1 domain-containing protein. (311 aa)
rad50RAD50 homolog, double strand break repair protein. (1312 aa)
palb2Uncharacterized protein. (1046 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (257 aa)
Rnf168RING-type domain-containing protein. (111 aa)
rnf8E3 ubiquitin-protein ligase RNF8; E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53 [...] (467 aa)
rad1RAD1 homolog (S. pombe). (287 aa)
LOC109957254Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. (258 aa)
pold1DNA polymerase. (1080 aa)
uimc1Uncharacterized protein. (1052 aa)
babam1BRISC and BRCA1 A complex member 1. (370 aa)
rmi2RecQ mediated genome instability 2. (139 aa)
SPIDRScaffold protein involved in DNA repair. (921 aa)
ube2v2Ubiquitin-conjugating enzyme E2 variant 2. (145 aa)
exo1Exonuclease 1. (810 aa)
sirt6Sirtuin 6. (345 aa)
LOC109957769Histone H2B; Belongs to the histone H2B family. (134 aa)
LOC109960591Tyrosine-protein kinase. (1102 aa)
brca1Uncharacterized protein. (1177 aa)
exd2Exonuclease 3'-5' domain containing 2. (639 aa)
LOC109952335Histone H2B; Belongs to the histone H2B family. (123 aa)
mdc1Uncharacterized protein. (2021 aa)
LOC109966247Small ubiquitin-related modifier. (124 aa)
atripUncharacterized protein. (545 aa)
Brcc3BRCA1/BRCA2-containing complex, subunit 3. (286 aa)
EME2ERCC4 domain-containing protein. (434 aa)
ENSMALP00000001069BTB domain-containing protein. (1162 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (718 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (470 aa)
gen1Uncharacterized protein. (923 aa)
fen1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (380 aa)
ppp4cSerine/threonine-protein phosphatase. (311 aa)
ube2iUbiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
ENSMALP00000003154Histone H2B; Belongs to the histone H2B family. (128 aa)
pole3Polymerase (DNA directed), epsilon 3 (p17 subunit). (155 aa)
LOC109969319Zgc:110269. (337 aa)
ENSMALP00000004273SAE2 domain-containing protein. (75 aa)
rad9bRAD9 checkpoint clamp component B. (376 aa)
tipinTIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (317 aa)
nsd2Nuclear receptor binding SET domain protein 2. (1121 aa)
parp1Poly [ADP-ribose] polymerase. (1018 aa)
RCBTB1RCC1 and BTB domain containing protein 1. (519 aa)
ENSMALP00000006512Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (91 aa)
kxd1KxDL motif containing 1. (184 aa)
BreBRISC and BRCA1 A complex member 2. (383 aa)
LOC109963691RPA_C domain-containing protein. (298 aa)
rad52RAD52 homolog, DNA repair protein. (437 aa)
rad51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (358 aa)
rfc5Replication factor C (activator 1) 5. (335 aa)
sirt7Sirtuin 7. (951 aa)
dna2DNA replication helicase/nuclease 2. (1400 aa)
sumo2Small ubiquitin-related modifier. (95 aa)
LOC109974756Uncharacterized protein. (245 aa)
ENSMALP00000009000Reverse transcriptase domain-containing protein. (160 aa)
topbp1DNA topoisomerase II binding protein 1. (1447 aa)
ccna2Cyclin A2; Belongs to the cyclin family. (436 aa)
rfc1Replication factor C subunit 1. (1086 aa)
LOC109959667ANK_REP_REGION domain-containing protein. (684 aa)
chek1Checkpoint kinase 1; Belongs to the protein kinase superfamily. (461 aa)
blmBLM RecQ like helicase. (1381 aa)
ENSMALP00000010367RecQ helicase-like 4. (794 aa)
rad17RAD17 checkpoint clamp loader component. (671 aa)
LOC109974159Polymerase (DNA directed), theta. (2810 aa)
LOC109972417UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
LOC109955588Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (528 aa)
Your Current Organism:
Monopterus albus
NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel
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