STRINGSTRING
LOC109955588 LOC109955588 cul4b cul4b xpa xpa rfc4 rfc4 tfpt tfpt cops4 cops4 ccnh ccnh mnat1 mnat1 ercc4 ercc4 LOC109955046 LOC109955046 polk polk rfc3 rfc3 rpa3 rpa3 ino80d ino80d rcbtb2 rcbtb2 cdk7 cdk7 ube2n ube2n rpa1 rpa1 gtf2h3 gtf2h3 ercc1 ercc1 cops2 cops2 rpa2 rpa2 ino80c ino80c pole pole rbx1 rbx1 LOC109963320 LOC109963320 usp45 usp45 ddb1 ddb1 pold4 pold4 LOC109957666 LOC109957666 parp2 parp2 xpc xpc pole2 pole2 nfrkb nfrkb chd1l chd1l rps27a rps27a ercc3 ercc3 cul4a cul4a kctd2 kctd2 ino80b ino80b LOC109959903 LOC109959903 ruvbl1 ruvbl1 ercc5 ercc5 ino80 ino80 LOC109957172 LOC109957172 LOC109967477 LOC109967477 LOC109967476 LOC109967476 LOC109967457 LOC109967457 bivm bivm pold3 pold3 parp3 parp3 rfc2 rfc2 LOC109968062 LOC109968062 YY1 YY1 mcrs1 mcrs1 uba52 uba52 meiob meiob COPS6 COPS6 LOC109973284 LOC109973284 rad23a rad23a wdr76 wdr76 gtf2h4 gtf2h4 pcna pcna pold1 pold1 RAD23B RAD23B LOC109972195 LOC109972195 ENSMALP00000030468 ENSMALP00000030468 ube2v2 ube2v2 rnf111 rnf111 cops7a cops7a ENSMALP00000032755 ENSMALP00000032755 LOC109966247 LOC109966247 cops5 cops5 RPA1 RPA1 pold2 pold2 LOC109961308 LOC109961308 gtf2h5 gtf2h5 ube2i ube2i cops3 cops3 pole3 pole3 rpap3 rpap3 ENSMALP00000004242 ENSMALP00000004242 cops8 cops8 actr5 actr5 gps1 gps1 LOC109956759 LOC109956759 parp1 parp1 actr8 actr8 LOC109957372 LOC109957372 sumo1 sumo1 RCBTB1 RCBTB1 kxd1 kxd1 LOC109963691 LOC109963691 LOC109969507 LOC109969507 gtf2h1 gtf2h1 rfc5 rfc5 sumo2 sumo2 ercc2 ercc2 LOC109974756 LOC109974756 ddb2 ddb2 actb actb rfc1 rfc1 LOC109972921 LOC109972921 LOC109971256 LOC109971256 LOC109972417 LOC109972417 LOC109953177 LOC109953177 LOC109959671 LOC109959671
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC109955588Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (528 aa)
cul4bCullin 4B; Belongs to the cullin family. (866 aa)
xpaXeroderma pigmentosum, complementation group A. (276 aa)
rfc4Replication factor C (activator 1) 4. (331 aa)
tfptTCF3 (E2A) fusion partner. (198 aa)
cops4COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis). (406 aa)
ccnhCyclin H; Belongs to the cyclin family. (319 aa)
mnat1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
ercc4Excision repair cross-complementation group 4. (871 aa)
LOC109955046YY1 transcription factor. (350 aa)
polkPolymerase (DNA directed) kappa. (884 aa)
rfc3Replication factor C (activator 1) 3. (356 aa)
rpa3Uncharacterized protein. (135 aa)
ino80dINO80 complex subunit Da. (989 aa)
rcbtb2Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (527 aa)
cdk7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (343 aa)
ube2nUbiquitin-conjugating enzyme E2Nb; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (599 aa)
gtf2h3General transcription factor IIH, polypeptide 3. (288 aa)
ercc1Excision repair cross-complementation group 1. (380 aa)
cops2COP9 signalosome subunit 2. (443 aa)
rpa2Replication protein A2. (278 aa)
ino80cINO80 complex subunit C. (201 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2210 aa)
rbx1Ring-box 1, E3 ubiquitin protein ligase. (108 aa)
LOC109963320Protein inhibitor of activated STAT, 1a. (702 aa)
usp45Ubiquitin carboxyl-terminal hydrolase. (836 aa)
ddb1Damage-specific DNA binding protein 1. (1139 aa)
pold4Si:dkey-28b4.7. (106 aa)
LOC109957666Von Willebrand factor A domain containing 5B2. (1442 aa)
parp2Poly [ADP-ribose] polymerase. (577 aa)
xpcXeroderma pigmentosum, complementation group C. (829 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (526 aa)
nfrkbNuclear factor related to kappaB binding protein. (1284 aa)
chd1lChromodomain helicase DNA binding protein 1-like. (1015 aa)
rps27aRibosomal protein S27a. (156 aa)
ercc3Excision repair cross-complementation group 3. (781 aa)
cul4aCullin 4A; Belongs to the cullin family. (557 aa)
kctd2Potassium channel tetramerization domain containing 2. (272 aa)
ino80bINO80 complex subunit B. (335 aa)
LOC109959903UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (153 aa)
ruvbl1RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (456 aa)
ercc5Excision repair cross-complementation group 5. (1146 aa)
ino80INO80 complex ATPase subunit. (1465 aa)
LOC109957172Small ubiquitin-related modifier. (95 aa)
LOC109967477Polymerase (DNA-directed), epsilon 4, accessory subunit. (153 aa)
LOC109967476CBFD_NFYB_HMF domain-containing protein. (132 aa)
LOC109967457SCY domain-containing protein. (126 aa)
bivmBasic, immunoglobulin-like variable motif containing. (502 aa)
pold3Polymerase (DNA-directed), delta 3, accessory subunit. (435 aa)
parp3Poly [ADP-ribose] polymerase. (513 aa)
rfc2Replication factor C (activator 1) 2. (357 aa)
LOC109968062Small ubiquitin-related modifier. (108 aa)
YY1YY1 transcription factor b. (370 aa)
mcrs1Microspherule protein 1. (465 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
meiobMethionine sulfoxide reductase B1b. (404 aa)
COPS6COP9 signalosome subunit 6. (316 aa)
LOC109973284Beta-actin. (375 aa)
rad23aRAD23 homolog A, nucleotide excision repair protein a. (348 aa)
wdr76WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (554 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (461 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (257 aa)
pold1DNA polymerase. (1080 aa)
RAD23BRAD23 homolog B, nucleotide excision repair protein. (383 aa)
LOC109972195Uncharacterized protein. (402 aa)
ENSMALP00000030468Uncharacterized protein. (511 aa)
ube2v2Ubiquitin-conjugating enzyme E2 variant 2. (145 aa)
rnf111Ring finger protein 111. (1028 aa)
cops7aCOP9 constitutive photomorphogenic homolog subunit 7A. (282 aa)
ENSMALP00000032755INO80 complex subunit E. (226 aa)
LOC109966247Small ubiquitin-related modifier. (124 aa)
cops5COP9 signalosome subunit 5. (338 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (718 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (470 aa)
LOC109961308Uncharacterized protein. (516 aa)
gtf2h5General transcription factor IIH, polypeptide 5. (71 aa)
ube2iUbiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
cops3COP9 signalosome subunit 3. (423 aa)
pole3Polymerase (DNA directed), epsilon 3 (p17 subunit). (155 aa)
rpap3RNA polymerase II associated protein 3. (621 aa)
ENSMALP00000004242Si:cabz01080528.1. (747 aa)
cops8COP9 signalosome subunit 8. (205 aa)
actr5Actin related protein 5; Belongs to the actin family. (626 aa)
gps1G protein pathway suppressor 1. (528 aa)
LOC109956759Centrin 4. (171 aa)
parp1Poly [ADP-ribose] polymerase. (1018 aa)
actr8Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily. (643 aa)
LOC109957372Uncharacterized protein. (378 aa)
sumo1Small ubiquitin-related modifier. (101 aa)
RCBTB1RCC1 and BTB domain containing protein 1. (519 aa)
kxd1KxDL motif containing 1. (184 aa)
LOC109963691RPA_C domain-containing protein. (298 aa)
LOC109969507ATPase family AAA domain containing 5a. (1814 aa)
gtf2h1General transcription factor IIH, polypeptide 1. (550 aa)
rfc5Replication factor C (activator 1) 5. (335 aa)
sumo2Small ubiquitin-related modifier. (95 aa)
ercc2Excision repair cross-complementation group 2. (760 aa)
LOC109974756Uncharacterized protein. (245 aa)
ddb2Damage-specific DNA binding protein 2. (492 aa)
actbUncharacterized protein. (385 aa)
rfc1Replication factor C subunit 1. (1086 aa)
LOC109972921Uncharacterized protein. (852 aa)
LOC109971256Protein inhibitor of activated STAT, 1b. (652 aa)
LOC109972417UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
LOC109953177Uncharacterized protein. (154 aa)
LOC109959671General transcription factor IIH subunit. (393 aa)
Your Current Organism:
Monopterus albus
NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel
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