STRINGSTRING
polr2d polr2d meiob meiob COPS6 COPS6 LOC109968656 LOC109968656 polr2l polr2l polr2b polr2b gtf2h4 gtf2h4 pcna pcna tcea1 tcea1 pold1 pold1 LOC109966948 LOC109966948 ENSMALP00000029992 ENSMALP00000029992 ZNF830 ZNF830 ENSMALP00000030468 ENSMALP00000030468 POLR2E POLR2E nrde2 nrde2 cops7a cops7a uvssa uvssa ppp1r42 ppp1r42 cops5 cops5 RPA1 RPA1 pold2 pold2 polr2f polr2f gtf2h5 gtf2h5 cops3 cops3 phf3 phf3 pole3 pole3 LOC109972895 LOC109972895 cops8 cops8 gps1 gps1 polr2c polr2c RCBTB1 RCBTB1 kxd1 kxd1 LOC109963691 LOC109963691 LOC109969507 LOC109969507 gtf2h1 gtf2h1 rfc5 rfc5 polr2k polr2k ercc2 ercc2 LOC109974756 LOC109974756 rfc1 rfc1 ENSMALP00000009999 ENSMALP00000009999 tcea3 tcea3 LOC109955588 LOC109955588 LOC109959671 LOC109959671 cul4b cul4b xpa xpa LOC109951387 LOC109951387 rfc4 rfc4 cops4 cops4 ccnh ccnh mnat1 mnat1 ercc4 ercc4 polk polk rfc3 rfc3 rpa3 rpa3 xrcc1 xrcc1 rcbtb2 rcbtb2 cdk7 cdk7 prpf19 prpf19 lig3 lig3 ppie ppie rpa1 rpa1 gtf2h3 gtf2h3 ercc1 ercc1 cops2 cops2 rpa2 rpa2 ep300 ep300 pole pole rbx1 rbx1 polr2g polr2g LOC109952679 LOC109952679 ddb1 ddb1 pold4 pold4 pole2 pole2 rps27a rps27a ercc3 ercc3 polr2h polr2h xab2 xab2 cul4a cul4a TCEANC TCEANC ercc6 ercc6 ercc5 ercc5 ercc8 ercc8 LOC109967477 LOC109967477 aqr aqr LOC109967476 LOC109967476 LOC109967457 LOC109967457 bivm bivm pold3 pold3 tceanc2 tceanc2 rfc2 rfc2 ENSMALP00000025016 ENSMALP00000025016 lig1 lig1 uba52 uba52 usp7 usp7
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
polr2dPolymerase (RNA) II (DNA directed) polypeptide D. (144 aa)
meiobMethionine sulfoxide reductase B1b. (404 aa)
COPS6COP9 signalosome subunit 6. (316 aa)
LOC109968656Transcription elongation factor A (SII), 2. (333 aa)
polr2lPolymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
polr2bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (461 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (257 aa)
tcea1Transcription elongation factor A (SII), 1. (478 aa)
pold1DNA polymerase. (1080 aa)
LOC109966948ISY1 splicing factor homolog. (284 aa)
ENSMALP00000029992Polymerase (RNA) II (DNA directed) polypeptide J. (117 aa)
ZNF830Zinc finger protein 830. (340 aa)
ENSMALP00000030468Uncharacterized protein. (511 aa)
POLR2ERNA polymerase II subunit E. (210 aa)
nrde2NRDE-2, necessary for RNA interference, domain containing. (1085 aa)
cops7aCOP9 constitutive photomorphogenic homolog subunit 7A. (282 aa)
uvssaUV-stimulated scaffold protein A. (702 aa)
ppp1r42Protein phosphatase 1, regulatory subunit 42. (321 aa)
cops5COP9 signalosome subunit 5. (338 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (718 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (470 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
gtf2h5General transcription factor IIH, polypeptide 5. (71 aa)
cops3COP9 signalosome subunit 3. (423 aa)
phf3PHD finger protein 3. (1674 aa)
pole3Polymerase (DNA directed), epsilon 3 (p17 subunit). (155 aa)
LOC109972895Si:ch73-1a9.3. (71 aa)
cops8COP9 signalosome subunit 8. (205 aa)
gps1G protein pathway suppressor 1. (528 aa)
polr2cPolymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
RCBTB1RCC1 and BTB domain containing protein 1. (519 aa)
kxd1KxDL motif containing 1. (184 aa)
LOC109963691RPA_C domain-containing protein. (298 aa)
LOC109969507ATPase family AAA domain containing 5a. (1814 aa)
gtf2h1General transcription factor IIH, polypeptide 1. (550 aa)
rfc5Replication factor C (activator 1) 5. (335 aa)
polr2kUncharacterized protein. (69 aa)
ercc2Excision repair cross-complementation group 2. (760 aa)
LOC109974756Uncharacterized protein. (245 aa)
rfc1Replication factor C subunit 1. (1086 aa)
ENSMALP00000009999USP domain-containing protein; Belongs to the peptidase C19 family. (69 aa)
tcea3Transcription elongation factor A (SII), 3. (467 aa)
LOC109955588Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (528 aa)
LOC109959671General transcription factor IIH subunit. (393 aa)
cul4bCullin 4B; Belongs to the cullin family. (866 aa)
xpaXeroderma pigmentosum, complementation group A. (276 aa)
LOC109951387DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1973 aa)
rfc4Replication factor C (activator 1) 4. (331 aa)
cops4COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis). (406 aa)
ccnhCyclin H; Belongs to the cyclin family. (319 aa)
mnat1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
ercc4Excision repair cross-complementation group 4. (871 aa)
polkPolymerase (DNA directed) kappa. (884 aa)
rfc3Replication factor C (activator 1) 3. (356 aa)
rpa3Uncharacterized protein. (135 aa)
xrcc1X-ray repair complementing defective repair in Chinese hamster cells 1. (627 aa)
rcbtb2Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (527 aa)
cdk7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (343 aa)
prpf19Pre-mRNA processing factor 19. (488 aa)
lig3DNA ligase. (1013 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (302 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (599 aa)
gtf2h3General transcription factor IIH, polypeptide 3. (288 aa)
ercc1Excision repair cross-complementation group 1. (380 aa)
cops2COP9 signalosome subunit 2. (443 aa)
rpa2Replication protein A2. (278 aa)
ep300E1A binding protein p300 b. (2602 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2210 aa)
rbx1Ring-box 1, E3 ubiquitin protein ligase. (108 aa)
polr2gPolymerase (RNA) II (DNA directed) polypeptide G-like. (172 aa)
LOC109952679E1A binding protein p300 a. (2513 aa)
ddb1Damage-specific DNA binding protein 1. (1139 aa)
pold4Si:dkey-28b4.7. (106 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (526 aa)
rps27aRibosomal protein S27a. (156 aa)
ercc3Excision repair cross-complementation group 3. (781 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
xab2XPA binding protein 2. (848 aa)
cul4aCullin 4A; Belongs to the cullin family. (557 aa)
TCEANCTranscription elongation factor A N-terminal and central domain containing. (337 aa)
ercc6Excision repair cross-complementation group 6. (1450 aa)
ercc5Excision repair cross-complementation group 5. (1146 aa)
ercc8Excision repair cross-complementation group 8. (398 aa)
LOC109967477Polymerase (DNA-directed), epsilon 4, accessory subunit. (153 aa)
aqrAquarius intron-binding spliceosomal factor. (1312 aa)
LOC109967476CBFD_NFYB_HMF domain-containing protein. (132 aa)
LOC109967457SCY domain-containing protein. (126 aa)
bivmBasic, immunoglobulin-like variable motif containing. (502 aa)
pold3Polymerase (DNA-directed), delta 3, accessory subunit. (435 aa)
tceanc2TFIIS N-terminal domain-containing protein. (224 aa)
rfc2Replication factor C (activator 1) 2. (357 aa)
ENSMALP00000025016USP domain-containing protein; Belongs to the peptidase C19 family. (97 aa)
lig1DNA ligase. (664 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
usp7Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family. (1105 aa)
Your Current Organism:
Monopterus albus
NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel
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