STRINGSTRING
RPA1 RPA1 pold2 pold2 fen1 fen1 prim2 prim2 pole3 pole3 mcm6 mcm6 mcm5 mcm5 rnaseh2b rnaseh2b LOC109963691 LOC109963691 rfc5 rfc5 dna2 dna2 rfc1 rfc1 rfc3 rfc3 rpa3 rpa3 rnaseh1 rnaseh1 mcm2 mcm2 rpa1 rpa1 rnaseh2c rnaseh2c rpa2 rpa2 pola2 pola2 pole pole ssbp1 ssbp1 pold4 pold4 pole2 pole2 LOC109967477 LOC109967477 pold3 pold3 rfc2 rfc2 lig1 lig1 mcm7 mcm7 mcm3 mcm3 pcna pcna pold1 pold1 mcm4 mcm4 rnaseh2a rnaseh2a prim1 prim1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (718 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (470 aa)
fen1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (380 aa)
prim2DNA primase large subunit; Regulatory subunit of the DNA primase complex and component of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which play an essential role in the initiation of DNA synthesis. The primase subunit of the polymerase alpha complex initiates DNA synthesis by oligomerising short RNA primers on both leading and lagging strands. (506 aa)
pole3Polymerase (DNA directed), epsilon 3 (p17 subunit). (155 aa)
mcm6DNA helicase; Belongs to the MCM family. (831 aa)
mcm5DNA helicase; Belongs to the MCM family. (737 aa)
rnaseh2bRibonuclease H2, subunit B. (305 aa)
LOC109963691RPA_C domain-containing protein. (298 aa)
rfc5Replication factor C (activator 1) 5. (335 aa)
dna2DNA replication helicase/nuclease 2. (1400 aa)
rfc1Replication factor C subunit 1. (1086 aa)
rfc3Replication factor C (activator 1) 3. (356 aa)
rpa3Uncharacterized protein. (135 aa)
rnaseh1Ribonuclease H1; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (300 aa)
mcm2DNA helicase; Belongs to the MCM family. (890 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (599 aa)
rnaseh2cRibonuclease H2, subunit C. (137 aa)
rpa2Replication protein A2. (278 aa)
pola2DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (601 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2210 aa)
ssbp1Single-stranded DNA binding protein 1. (150 aa)
pold4Si:dkey-28b4.7. (106 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (526 aa)
LOC109967477Polymerase (DNA-directed), epsilon 4, accessory subunit. (153 aa)
pold3Polymerase (DNA-directed), delta 3, accessory subunit. (435 aa)
rfc2Replication factor C (activator 1) 2. (357 aa)
lig1DNA ligase. (664 aa)
mcm7DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (727 aa)
mcm3DNA helicase; Belongs to the MCM family. (816 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (257 aa)
pold1DNA polymerase. (1080 aa)
mcm4DNA helicase; Belongs to the MCM family. (860 aa)
rnaseh2aRibonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (308 aa)
prim1DNA primase; Belongs to the eukaryotic-type primase small subunit family. (421 aa)
Your Current Organism:
Monopterus albus
NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel
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