STRINGSTRING
sf3a1 sf3a1 LOC109965937 LOC109965937 prpf6 prpf6 lsm8 lsm8 ENSMALP00000000489 ENSMALP00000000489 LOC109953735 LOC109953735 snrpc snrpc ppih ppih plrg1 plrg1 LOC109964718 LOC109964718 snw1 snw1 snrnp200 snrnp200 SNRPG SNRPG Wbp11 Wbp11 lsm6 lsm6 thoc3 thoc3 LOC109970563 LOC109970563 LOC109974630 LOC109974630 DHX15 DHX15 dhx16 dhx16 cdc40 cdc40 NCBP1 NCBP1 prpf8 prpf8 LOC109972337 LOC109972337 slu7 slu7 LOC109966547 LOC109966547 sf3a3 sf3a3 LOC109956830 LOC109956830 sf3b4 sf3b4 lsm3 lsm3 ctnnbl1 ctnnbl1 PUF60 PUF60 u2surp u2surp LOC109952516 LOC109952516 ENSMALP00000010922 ENSMALP00000010922 ddx42 ddx42 sf3b3 sf3b3 bcas2 bcas2 phf5a phf5a prpf31 prpf31 zmat2 zmat2 rbmx rbmx u2af2 u2af2 ENSMALP00000014319 ENSMALP00000014319 hnrnpk hnrnpk rbm8a rbm8a lsm5 lsm5 rbm17 rbm17 snrpd2 snrpd2 syf2 syf2 ppie ppie LOC109962613 LOC109962613 LOC109970796 LOC109970796 LOC109973094 LOC109973094 ccdc12 ccdc12 Snrpf Snrpf snrpa snrpa bud31 bud31 srsf7 srsf7 usp39 usp39 LOC109953359 LOC109953359 dhx8 dhx8 snrpd3 snrpd3 LOC109958645 LOC109958645 prpf4 prpf4 rbm22 rbm22 LOC109970759 LOC109970759 magoh magoh LOC109967465 LOC109967465 snrpd1 snrpd1 lsm7 lsm7 eftud2 eftud2 hnrnpc hnrnpc HSPA8 HSPA8 ENSMALP00000021199 ENSMALP00000021199 fus fus HSPA8-2 HSPA8-2 LOC109952721 LOC109952721 xab2 xab2 LOC109960505 LOC109960505 snrpa1 snrpa1 LOC109959419 LOC109959419 ENSMALP00000022953 ENSMALP00000022953 snrnp27 snrnp27 snrnp40 snrnp40 lsm2 lsm2 prpf40a prpf40a snu13 snu13 aqr aqr ddx46 ddx46 tra2b tra2b rp9 rp9 LOC109972077 LOC109972077 srsf10 srsf10 sf3b1 sf3b1 smndc1 smndc1 txnl4a txnl4a SRSF3 SRSF3 lsm4 lsm4 hnrnpu hnrnpu sart1 sart1 prpf38a prpf38a ALYREF ALYREF prpf38b prpf38b sf3b6 sf3b6 LOC109971588 LOC109971588 ENSMALP00000028610 ENSMALP00000028610 thoc2 thoc2 Tcerg1 Tcerg1 Sf3b5 Sf3b5 LOC109962270 LOC109962270 sf3a2 sf3a2 ENSMALP00000029565 ENSMALP00000029565 LOC109966948 LOC109966948 cherp cherp LOC109966897 LOC109966897 tra2a tra2a ppil1 ppil1 dhx38 dhx38 ENSMALP00000030787 ENSMALP00000030787 LOC109962375 LOC109962375 thoc1 thoc1 cdc5l cdc5l ddx23 ddx23 LOC109971690 LOC109971690 DDX5 DDX5
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sf3a1Splicing factor 3a, subunit 1. (787 aa)
LOC109965937Uncharacterized protein. (521 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (923 aa)
lsm8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
ENSMALP00000000489Uncharacterized protein; Belongs to the heat shock protein 70 family. (640 aa)
LOC109953735Heat shock 70kDa protein 1a; Belongs to the heat shock protein 70 family. (640 aa)
snrpcU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (147 aa)
ppihPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (168 aa)
plrg1Pleiotropic regulator 1. (510 aa)
LOC109964718Uncharacterized protein. (201 aa)
snw1SNW domain containing 1. (536 aa)
snrnp200Small nuclear ribonucleoprotein 200 (U5). (2136 aa)
SNRPGSmall nuclear ribonucleoprotein G. (72 aa)
Wbp11Uncharacterized protein. (183 aa)
lsm6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (117 aa)
thoc3THO complex 3. (322 aa)
LOC109970563TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (416 aa)
LOC109974630DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family. (469 aa)
DHX15DEAH-box helicase 15. (758 aa)
dhx16DEAH (Asp-Glu-Ala-His) box polypeptide 16. (1030 aa)
cdc40Cell division cycle 40 homolog (S. cerevisiae). (595 aa)
NCBP1Nuclear cap binding protein subunit 1. (795 aa)
prpf8Pre-mRNA processing factor 8. (2244 aa)
LOC109972337Heterogeneous nuclear ribonucleoprotein K, like. (430 aa)
slu7SLU7 homolog, splicing factor. (563 aa)
LOC109966547DEAH (Asp-Glu-Ala-His) box helicase 15. (763 aa)
sf3a3Splicing factor 3a, subunit 3. (501 aa)
LOC109956830RRM domain-containing protein. (260 aa)
sf3b4Splicing factor 3b, subunit 4. (402 aa)
lsm3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
ctnnbl1Catenin, beta like 1. (579 aa)
PUF60Poly-U binding splicing factor b. (497 aa)
u2surpU2 snRNP-associated SURP domain containing. (955 aa)
LOC109952516RRM domain-containing protein. (269 aa)
ENSMALP00000010922RRM domain-containing protein. (65 aa)
ddx42DEAD (Asp-Glu-Ala-Asp) box helicase 42. (902 aa)
sf3b3Splicing factor 3b, subunit 3. (1217 aa)
bcas2BCAS2 pre-mRNA processing factor. (225 aa)
phf5aPHD finger protein 5A. (110 aa)
prpf31PRP31 pre-mRNA processing factor 31 homolog (yeast). (497 aa)
zmat2Zinc finger, matrin-type 2. (249 aa)
rbmxRNA binding motif protein X-linked. (372 aa)
u2af2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (478 aa)
ENSMALP00000014319RRM domain-containing protein. (93 aa)
hnrnpkHeterogeneous nuclear ribonucleoprotein K. (436 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (175 aa)
lsm5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (62 aa)
rbm17RNA binding motif protein 17. (422 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
syf2SYF2 pre-mRNA-splicing factor. (241 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (302 aa)
LOC109962613Apoptotic chromatin condensation inducer 1a. (1347 aa)
LOC109970796Serine and arginine rich splicing factor 9. (257 aa)
LOC109973094Heat shock 70kDa protein 8b1; Belongs to the heat shock protein 70 family. (646 aa)
ccdc12Coiled-coil domain containing 12. (163 aa)
SnrpfSmall nuclear ribonucleoprotein polypeptide F. (85 aa)
snrpaSmall nuclear ribonucleoprotein polypeptide A. (278 aa)
bud31BUD31 homolog. (144 aa)
srsf7Serine and arginine rich splicing factor 7a. (254 aa)
usp39Ubiquitin specific peptidase 39. (500 aa)
LOC109953359Serine and arginine rich splicing factor 2a. (230 aa)
dhx8DEAH (Asp-Glu-Ala-His) box polypeptide 8. (1197 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
LOC109958645Serine and arginine rich splicing factor 4. (360 aa)
prpf4PRP4 pre-mRNA processing factor 4 homolog (yeast). (510 aa)
rbm22RNA binding motif protein 22. (427 aa)
LOC109970759Heterogeneous nuclear ribonucleoprotein A1a. (343 aa)
magohMago homolog, exon junction complex subunit. (147 aa)
LOC109967465Heterogeneous nuclear ribonucleoprotein M. (673 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
lsm7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (130 aa)
eftud2Elongation factor Tu GTP binding domain containing 2. (838 aa)
hnrnpcRRM domain-containing protein. (314 aa)
HSPA8Uncharacterized protein; Belongs to the heat shock protein 70 family. (661 aa)
ENSMALP00000021199SAP domain-containing protein. (53 aa)
fusFUS RNA binding protein. (543 aa)
HSPA8-2Heat shock 70kDa protein 8a1; Belongs to the heat shock protein 70 family. (666 aa)
LOC109952721RRM domain-containing protein. (218 aa)
xab2XPA binding protein 2. (848 aa)
LOC109960505Uncharacterized protein. (227 aa)
snrpa1Small nuclear ribonucleoprotein polypeptide A. (284 aa)
LOC109959419Zgc:163098. (889 aa)
ENSMALP00000022953Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (66 aa)
snrnp27Small nuclear ribonucleoprotein 27 (U4/U6.U5). (161 aa)
snrnp40Small nuclear ribonucleoprotein 40 (U5). (335 aa)
lsm2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
prpf40aPRP40 pre-mRNA processing factor 40 homolog A. (879 aa)
snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
aqrAquarius intron-binding spliceosomal factor. (1312 aa)
ddx46DEAD (Asp-Glu-Ala-Asp) box polypeptide 46. (1062 aa)
tra2bTransformer 2 beta homolog. (266 aa)
rp9RP9 pre-mRNA splicing factor. (182 aa)
LOC109972077Serine and arginine rich splicing factor 1a. (255 aa)
srsf10Serine and arginine rich splicing factor 10. (177 aa)
sf3b1Splicing factor 3b, subunit 1. (1314 aa)
smndc1Survival motor neuron domain containing 1. (238 aa)
txnl4aThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
SRSF3Serine and arginine rich splicing factor 3b. (165 aa)
lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (143 aa)
hnrnpuHeterogeneous nuclear ribonucleoprotein Ub. (781 aa)
sart1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (773 aa)
prpf38aPre-mRNA processing factor 38A. (318 aa)
ALYREFAly/REF export factor. (269 aa)
prpf38bUncharacterized protein. (464 aa)
sf3b6Splicing factor 3b, subunit 6. (186 aa)
LOC109971588Heat shock 70kDa protein 1b; Belongs to the heat shock protein 70 family. (638 aa)
ENSMALP00000028610RRM domain-containing protein. (233 aa)
thoc2THO complex 2. (1488 aa)
Tcerg1HMG box domain-containing protein. (226 aa)
Sf3b5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (82 aa)
LOC109962270RNA binding motif protein 25b. (525 aa)
sf3a2Splicing factor 3a, subunit 2. (296 aa)
ENSMALP00000029565RNA binding motif protein 25a. (435 aa)
LOC109966948ISY1 splicing factor homolog. (284 aa)
cherpCalcium homeostasis endoplasmic reticulum protein. (944 aa)
LOC109966897Small nuclear ribonucleoprotein polypeptides B and B1. (296 aa)
tra2aTransformer 2 alpha homolog. (303 aa)
ppil1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
dhx38DEAH (Asp-Glu-Ala-His) box polypeptide 38. (1294 aa)
ENSMALP00000030787RRM domain-containing protein. (124 aa)
LOC109962375Serine and arginine rich splicing factor 5b. (296 aa)
thoc1THO complex 1. (654 aa)
cdc5lCDC5 cell division cycle 5-like (S. pombe). (812 aa)
ddx23DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (804 aa)
LOC109971690Heat shock cognate 70; Belongs to the heat shock protein 70 family. (653 aa)
DDX5DEAD-box helicase 5; Belongs to the DEAD box helicase family. (518 aa)
Your Current Organism:
Monopterus albus
NCBI taxonomy Id: 43700
Other names: Fluta alba, M. albus, Muraena alba, rice-field eel, swamp eel
Server load: low (22%) [HD]