Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AZC_1281 | dnaG | AZC_1281 | AZC_3642 | 4Fe-4S binding domain protein. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. | 0.416 |
| AZC_1325 | phbC | AZC_1325 | AZC_1845 | C4-dicarboxylate transporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | Poly-beta-hydroxybutyrate polymerase; Polymerizes D(-)-3-hydroxybutyryl-CoA to create PHB which consists of thousands of hydroxybutyrate molecules linked end to end. PHB serves as an intracellular energy reserve material when cells grow under conditions of nutrient limitation; Belongs to the PHA/PHB synthase family. Type I PhaC subfamily. | 0.537 |
| AZC_2337 | cheY | AZC_2337 | AZC_0620 | 3-hydroxybutyryl-CoA dehydrogenase. | CheY-like response regulator. | 0.560 |
| AZC_3212 | AZC_4664 | AZC_3212 | AZC_4664 | 3-hydroxybutyryl-CoA dehydrogenase. | 3-hydroxybutyryl-CoA dehydrogenase. | 0.921 |
| AZC_3212 | cheY | AZC_3212 | AZC_0620 | 3-hydroxybutyryl-CoA dehydrogenase. | CheY-like response regulator. | 0.560 |
| AZC_4664 | AZC_3212 | AZC_4664 | AZC_3212 | 3-hydroxybutyryl-CoA dehydrogenase. | 3-hydroxybutyryl-CoA dehydrogenase. | 0.921 |
| AZC_4664 | cheY | AZC_4664 | AZC_0620 | 3-hydroxybutyryl-CoA dehydrogenase. | CheY-like response regulator. | 0.560 |
| amtB | glnK | AZC_4226 | AZC_4227 | Ammonium transporter. | GlnK protein; Belongs to the P(II) protein family. | 0.999 |
| amtB | gltA | AZC_4226 | AZC_1710 | Ammonium transporter. | Citrate synthase; Belongs to the citrate synthase family. | 0.496 |
| amtB | nifB | AZC_4226 | AZC_3414 | Ammonium transporter. | Nitrogenase cofactor biosynthesis protein. | 0.597 |
| amtB | rpoN | AZC_4226 | AZC_3925 | Ammonium transporter. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is responsible for the expression of the nitrogen fixation genes. | 0.681 |
| cheY | AZC_2337 | AZC_0620 | AZC_2337 | CheY-like response regulator. | 3-hydroxybutyryl-CoA dehydrogenase. | 0.560 |
| cheY | AZC_3212 | AZC_0620 | AZC_3212 | CheY-like response regulator. | 3-hydroxybutyryl-CoA dehydrogenase. | 0.560 |
| cheY | AZC_4664 | AZC_0620 | AZC_4664 | CheY-like response regulator. | 3-hydroxybutyryl-CoA dehydrogenase. | 0.560 |
| dksA | rpoN | AZC_1664 | AZC_3925 | Zn-finger protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is responsible for the expression of the nitrogen fixation genes. | 0.468 |
| dksA | tatB | AZC_1664 | AZC_1737 | Zn-finger protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. | Twin-arginine translocation protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation. | 0.433 |
| dnaG | AZC_1281 | AZC_3642 | AZC_1281 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. | 4Fe-4S binding domain protein. | 0.416 |
| dnaG | dnaX | AZC_3642 | AZC_0142 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. | ATPase; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.921 |
| dnaX | dnaG | AZC_0142 | AZC_3642 | ATPase; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. | 0.921 |
| glnK | amtB | AZC_4227 | AZC_4226 | GlnK protein; Belongs to the P(II) protein family. | Ammonium transporter. | 0.999 |
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