(20 nodes) Mixed, incl. Multiheme cytochrome superfamily, and Pectin lyase fold/virulence factor network (Sphingomonas histidinilytica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SKB28921.1	LVIVD repeat-containing protein. (1363 aa)
	SKB28944.1	Hypothetical protein. (636 aa)
	SKB28949.1	Haem-degrading. (670 aa)
	SKB28973.1	Cytochrome c554 and c-prime. (470 aa)
	SKB40517.1	Hypothetical protein. (180 aa)
	SKB53658.1	Hypothetical protein. (787 aa)
	SKB53673.1	Tetratricopeptide repeat-containing protein. (442 aa)
	SKB69843.1	Hypothetical protein. (98 aa)
	SKB72816.1	Hypothetical protein. (162 aa)
	SKB72827.1	Outer membrane immunogenic protein. (188 aa)
	SKB68788.1	CHAT domain-containing protein. (1034 aa)
	SKB68802.1	Filamentous hemagglutinin family N-terminal domain-containing protein. (1531 aa)
	SKB68811.1	Hemolysin activation/secretion protein. (601 aa)
	SKB91501.1	Doubled CXXCH domain-containing protein. (607 aa)
	SKB91508.1	Hypothetical protein. (292 aa)
	SKB91516.1	Fe-S-cluster-containing hydrogenase component 2. (817 aa)
	SKB91525.1	Cytochrome c-type biogenesis protein CcmH. (325 aa)
	SKB94522.1	Right handed beta helix region. (355 aa)
	SKC03985.1	Hypothetical protein. (387 aa)
	SKC07529.1	Beta-lactamase class A. (404 aa)

Your Current Organism:

Sphingomonas histidinilytica

NCBI taxonomy Id: 439228
Other names: CCM 7545, MTCC 9473, S. histidinilytica, Sphingomonas histidinilytica Nigam et al. 2010, Sphingomonas sp. UM2, strain UM2

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SKB28921.1	SKB28944.1	SAMN06295920_101485	SAMN06295920_101486	LVIVD repeat-containing protein.	Hypothetical protein.	0.961
SKB28921.1	SKB28949.1	SAMN06295920_101485	SAMN06295920_101487	LVIVD repeat-containing protein.	Haem-degrading.	0.961
SKB28921.1	SKB28973.1	SAMN06295920_101485	SAMN06295920_101488	LVIVD repeat-containing protein.	Cytochrome c554 and c-prime.	0.961
SKB28921.1	SKB40517.1	SAMN06295920_101485	SAMN06295920_102359	LVIVD repeat-containing protein.	Hypothetical protein.	0.707
SKB28921.1	SKB53673.1	SAMN06295920_101485	SAMN06295920_103534	LVIVD repeat-containing protein.	Tetratricopeptide repeat-containing protein.	0.698
SKB28921.1	SKB68788.1	SAMN06295920_101485	SAMN06295920_10554	LVIVD repeat-containing protein.	CHAT domain-containing protein.	0.760
SKB28921.1	SKB68802.1	SAMN06295920_101485	SAMN06295920_10555	LVIVD repeat-containing protein.	Filamentous hemagglutinin family N-terminal domain-containing protein.	0.638
SKB28921.1	SKB68811.1	SAMN06295920_101485	SAMN06295920_10556	LVIVD repeat-containing protein.	Hemolysin activation/secretion protein.	0.740
SKB28921.1	SKB69843.1	SAMN06295920_101485	SAMN06295920_105114	LVIVD repeat-containing protein.	Hypothetical protein.	0.417
SKB28921.1	SKB91501.1	SAMN06295920_101485	SAMN06295920_108174	LVIVD repeat-containing protein.	Doubled CXXCH domain-containing protein.	0.800
SKB28921.1	SKB91508.1	SAMN06295920_101485	SAMN06295920_108175	LVIVD repeat-containing protein.	Hypothetical protein.	0.799
SKB28921.1	SKB91516.1	SAMN06295920_101485	SAMN06295920_108176	LVIVD repeat-containing protein.	Fe-S-cluster-containing hydrogenase component 2.	0.774
SKB28921.1	SKB91525.1	SAMN06295920_101485	SAMN06295920_108177	LVIVD repeat-containing protein.	Cytochrome c-type biogenesis protein CcmH.	0.612
SKB28921.1	SKB94522.1	SAMN06295920_101485	SAMN06295920_109103	LVIVD repeat-containing protein.	Right handed beta helix region.	0.573
SKB28944.1	SKB28921.1	SAMN06295920_101486	SAMN06295920_101485	Hypothetical protein.	LVIVD repeat-containing protein.	0.961
SKB28944.1	SKB28949.1	SAMN06295920_101486	SAMN06295920_101487	Hypothetical protein.	Haem-degrading.	0.961
SKB28944.1	SKB28973.1	SAMN06295920_101486	SAMN06295920_101488	Hypothetical protein.	Cytochrome c554 and c-prime.	0.961
SKB28944.1	SKB40517.1	SAMN06295920_101486	SAMN06295920_102359	Hypothetical protein.	Hypothetical protein.	0.723
SKB28944.1	SKB53673.1	SAMN06295920_101486	SAMN06295920_103534	Hypothetical protein.	Tetratricopeptide repeat-containing protein.	0.727
SKB28944.1	SKB68788.1	SAMN06295920_101486	SAMN06295920_10554	Hypothetical protein.	CHAT domain-containing protein.	0.767