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| | Aboo_0002 | KEGG: tvo:TVN0221 signal peptidase I. (275 aa) |
| | eif5a | Translation initiation factor eIF-5A; Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family. (131 aa) |
| | rps19e | Ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (150 aa) |
| | Aboo_0025 | PFAM: DNA-binding TFAR19-related protein; KEGG: pto:PTO0204 hypothetical protein; Belongs to the PDCD5 family. (111 aa) |
| | rpl39e | PFAM: Ribosomal protein L39e; KEGG: tvo:TVN0009 50S ribosomal protein L39e; Belongs to the eukaryotic ribosomal protein eL39 family. (51 aa) |
| | rpl31e | PFAM: Ribosomal protein L31e; KEGG: tvo:TVN0010 50S ribosomal protein L31e; Belongs to the ribosomal protein L31e family. (87 aa) |
| | eif6 | Translation initiation factor eIF-6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex. (218 aa) |
| | dys | Deoxyhypusine synthase; Catalyzes the NAD-dependent oxidative cleavage of spermidine and the subsequent transfer of the butylamine moiety of spermidine to the epsilon-amino group of a specific lysine residue of the eIF-5A precursor protein to form the intermediate deoxyhypusine residue. (311 aa) |
| | rpl10e | KEGG: mfe:Mefer_0789 ribosomal protein L10.e; TIGRFAM: ribosomal protein L10.e; PFAM: Ribosomal protein L10e/L16; Belongs to the universal ribosomal protein uL16 family. (171 aa) |
| | rps12 | Ribosomal protein S23 (S12); With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family. (142 aa) |
| | rps7 | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. (187 aa) |
| | Aboo_0072 | KEGG: pto:PTO0417 elongation factor EF-2; TIGRFAM: translation elongation factor aEF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain protein. (734 aa) |
| | tuf | Translation elongation factor EF-1, subunit alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily. (424 aa) |
| | rps10 | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (104 aa) |
| | Aboo_0077 | KEGG: tac:Ta0623 hypothetical protein. (123 aa) |
| | gltX | glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu). (557 aa) |
| | Aboo_0093 | Small GTP-binding protein; KEGG: tsi:TSIB_1365 predicted GTPase, containing NOG1 domain; TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related. (317 aa) |
| | Aboo_0109 | PFAM: Pre-mRNA processing ribonucleoprotein, binding domain protein; KEGG: mtp:Mthe_0831 pre-mRNA processing ribonucleoprotein, binding region. (262 aa) |
| | Aboo_0121 | PFAM: protein of unknown function Met10; KEGG: tsi:TSIB_1461 Met-10+ like protein. (311 aa) |
| | psmB | Proteasome endopeptidase complex, beta subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. (210 aa) |
| | Aboo_0130 | SMART: Nucleotide binding protein PINc; KEGG: pto:PTO0520 hypothetical protein. (161 aa) |
| | Aboo_0148 | PFAM: NAD-dependent epimerase/dehydratase; KEGG: mma:MM_1134 UDP-glucose 4-epimerase. (317 aa) |
| | flpA | Fibrillarin; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. (211 aa) |
| | Aboo_0179 | SMART: RNA polymerase Rbp10; KEGG: pto:PTO0391 DNA-directed RNA polymerase subunit P. (43 aa) |
| | rpl37ae | Ribosomal protein L37a; Binds to the 23S rRNA. (84 aa) |
| | rrp42 | 3' exoribonuclease; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site. (270 aa) |
| | rrp41 | Exosome complex exonuclease 1; Catalytic component of the exosome, which is a complex involved in RNA degradation. Has 3'->5' exoribonuclease activity. Can also synthesize heteropolymeric RNA-tails. (245 aa) |
| | rrp4 | K-like, type 1, subgroup; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome. (230 aa) |
| | Aboo_0184 | PFAM: Ribosome maturation protein SBDS-like; KEGG: pto:PTO0626 putative RNA-associated protein. (232 aa) |
| | psmA | Proteasome endopeptidase complex, alpha subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. (243 aa) |
| | Aboo_0196 | DEAD_2 domain protein; KEGG: tvo:TVN0013 RAD3-related DNA helicase; PFAM: DEAD_2 domain protein; SMART: helicase c2; Helicase-like, DEXD box c2 type; DEAD-like helicase. (619 aa) |
| | Aboo_0210 | PFAM: translation initiation factor SUI1; KEGG: pto:PTO0648 translation initiation factor SUI1; Belongs to the SUI1 family. (98 aa) |
| | tmcA | Protein of unknown function DUF699 ATPase putative; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP). (733 aa) |
| | Aboo_0279 | PFAM: NAD-dependent epimerase/dehydratase; KEGG: mbu:Mbur_2037 NAD-dependent epimerase/dehydratase. (285 aa) |
| | Aboo_0314 | PFAM: peptidase M50; KEGG: tac:Ta1274 sterol-regulatory element-binding proteins intramembrane protease related protein. (512 aa) |
| | Aboo_0399 | KEGG: pto:PTO0555 putative ATPase RIL; PFAM: ABC transporter related; metal-binding domain in RNase L inhibitor, RLI; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SMART: AAA ATPase. (586 aa) |
| | hel308 | DEAD/DEAH box helicase domain protein; DNA-dependent ATPase and 3'-5' DNA helicase that may be involved in repair of stalled replication forks. (694 aa) |
| | Aboo_0405 | SMART: AAA ATPase; TIGRFAM: AAA family ATPase, CDC48 subfamily; KEGG: mtp:Mthe_0531 AAA family ATPase, CDC48 subfamily protein; PFAM: AAA ATPase central domain protein; AAA ATPase VAT domain protein; cell division protein 48 CDC48 domain 2. (727 aa) |
| | Aboo_0406 | PFAM: heat shock protein Hsp20; KEGG: tna:CTN_0305 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family. (137 aa) |
| | Aboo_0413 | TIGRFAM: ribonuclease PH; KEGG: hor:Hore_15390 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2. (234 aa) |
| | Aboo_0472 | KEGG: mth:MTH886 H/ACA RNA-protein complex component Gar1. (85 aa) |
| | tfb | Transcription factor TFIIB cyclin-related protein; Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB). (312 aa) |
| | Aboo_0484 | Diphthamide biosynthesis protein; Catalyzes the first step of diphthamide biosynthesis, i.e. the transfer of the 3-amino-3-carboxypropyl group from S-adenosyl-L- methionine (SAM) to the C2 position of the imidazole ring of the target histidine residue in translation elongation factor 2 (EF-2). Belongs to the DPH1/DPH2 family. (325 aa) |
| | Aboo_0501 | DEAD/DEAH box helicase domain protein; KEGG: tga:TGAM_1910 ATP-dependent RNA helicase, DEAD-family (DeaD); PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; Belongs to the DEAD box helicase family. (451 aa) |
| | cca | CCA-adding enzyme; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. (445 aa) |
| | nac | Ubiquitin-associated- domain-containing protein; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family. (112 aa) |
| | rps27ae | PFAM: Ribosomal protein S27a; KEGG: pto:PTO0870 30S ribosomal protein S27ae; Belongs to the eukaryotic ribosomal protein eS31 family. (50 aa) |
| | rps24e | PFAM: Ribosomal protein S24e; KEGG: hma:rrnAC2488 30S ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family. (99 aa) |
| | spt4 | DNA-directed RNA polymerase subunit E, RpoE2; Stimulates transcription elongation; Belongs to the archaeal Spt4 family. (61 aa) |
| | Aboo_0568 | TIGRFAM: DNA-directed RNA polymerase; KEGG: tvo:TVN0486 DNA-directed RNA polymerase subunit E'; PFAM: RNA polymerase Rpb7 domain protein; RNA binding S1 domain protein. (199 aa) |
| | dphB | Diphthine synthase; S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the trimethylation of the amino group of the modified target histidine residue in translation elongation factor 2 (EF-2), to form an intermediate called diphthine. The three successive methylation reactions represent the second step of diphthamide biosynthesis. (258 aa) |
| | tfb-2 | Zinc finger TFIIB-type domain protein; Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB). (313 aa) |
| | rps3ae | PFAM: ribosomal protein S3Ae; KEGG: tko:TK1254 30S ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family. (241 aa) |
| | Aboo_0656 | Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. (181 aa) |
| | Aboo_0723 | PFAM: 20S proteasome A and B subunits; Proteasome alpha-subunit; KEGG: mae:Maeo_0181 proteasome subunit alpha. (233 aa) |
| | proS | prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). (465 aa) |
| | map | Methionine aminopeptidase, type II; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val); Belongs to the peptidase M24A family. Methionine aminopeptidase archaeal type 2 subfamily. (287 aa) |
| | Aboo_0763 | PFAM: Protein of unknown function DUF655; KEGG: tvo:TVN0314 RNA-binding protein. (182 aa) |
| | Aboo_0764 | PFAM: RNA polymerase Rpb4; KEGG: afu:AF1530 hypothetical protein. (104 aa) |
| | rpl21e | PFAM: Ribosomal protein L21e; KEGG: mka:MK1660 50S ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family. (96 aa) |
| | rtcA | RNA 3'-phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing. (326 aa) |
| | rps6e | PFAM: Ribosomal protein S6e; KEGG: rci:LRC420 30S ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family. (129 aa) |
| | eif2g | Protein synthesis factor GTP-binding protein; eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EIF2G subfamily. (408 aa) |
| | rpl12 | Ribosomal protein 60S; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family. (105 aa) |
| | rpl10 | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (334 aa) |
| | rpl1 | Ribosomal protein L1; Binds directly to 23S rRNA. Probably involved in E site tRNA release. (213 aa) |
| | rpl11 | Ribosomal protein L11-like protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. (158 aa) |
| | spt5 | NusG antitermination factor; Stimulates transcription elongation; Belongs to the archaeal Spt5 family. (277 aa) |
| | Aboo_0865 | TIGRFAM: protein translocase SEC61 complex, gamma subunit; KEGG: tvo:TVN1444 protein translocase subunit Sss1. (73 aa) |
| | Aboo_0891 | PFAM: Protein of unknown function DUF1610; KEGG: tac:Ta0567 hypothetical protein. (54 aa) |
| | ef1b | Translation elongation factor aEF-1 beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA. (88 aa) |
| | nep1 | Suppressor Mra1 family protein; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA. (219 aa) |
| | Aboo_0917 | KEGG: tvo:TVN0992 signal recognition particle protein SRP54; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; Signal peptide binding (SRP54) M- domain protein; SMART: AAA ATPase. (449 aa) |
| | rpoK | RNA polymerase Rpb6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit family. (57 aa) |
| | infB | Translation initiation factor aIF-2; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. (578 aa) |
| | Aboo_0945 | Von Willebrand factor type A; KEGG: hypothetical protein LOC100192500; PFAM: von Willebrand factor type A; Protein of unknown function DUF1628; SMART: von Willebrand factor type A. (2166 aa) |
| | Aboo_0953 | TIGRFAM: transcription factor S; PFAM: Transcription factor TFIIS; DNA-directed RNA polymerase, M/15 kDa subunit; KEGG: pto:PTO0894 DNA-directed RNA polymerase subunit M; SMART: Transcription factor TFIIS; DNA-directed RNA polymerase, M/15 kDa subunit. (103 aa) |
| | Aboo_0958 | KEGG: mfe:Mefer_1519 small GTP-binding protein; TIGRFAM: small GTP-binding protein; PFAM: TGS domain protein; GTP-binding protein HSR1-related. (365 aa) |
| | tbp | TATA-box binding family protein; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation. (181 aa) |
| | Aboo_1012 | Hypothetical protein; KEGG: cma:Cmaq_0787 DNA-directed RNA polymerase, M/15 kDa subunit. (134 aa) |
| | prf1 | Peptide chain release factor 1; Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. (406 aa) |
| | nusA | NusA family KH domain protein; Participates in transcription termination. Belongs to the NusA family. (141 aa) |
| | Aboo_1088 | PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: rci:LRC359 50S ribosomal protein L30E. (95 aa) |
| | rpoA2 | DNA-directed RNA polymerase, subunit A'; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (516 aa) |
| | Aboo_1090 | DNA-directed RNA polymerase subunit A; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (895 aa) |
| | Aboo_1091 | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1201 aa) |
| | rpoH | RNA polymerase Rpb5; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family. (84 aa) |
| | Aboo_1093 | KEGG: mmx:MmarC6_0609 ATP binding protein; TIGRFAM: ATP binding protein; PFAM: protein of unknown function DUF71 ATP-binding region. (221 aa) |
| | Aboo_1116 | PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: mac:MA0823 ss-DNA-specific exonuclease. (477 aa) |
| | eif2b | Translation initiation factor aIF-2, beta subunit; eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Belongs to the eIF-2-beta/eIF-5 family. (205 aa) |
| | rpl15e | PFAM: Ribosomal protein L15e; KEGG: mvu:Metvu_0558 ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family. (199 aa) |
| | Aboo_1131 | Thermosome; KEGG: tvo:TVN0507 chaperonin GroEL; TIGRFAM: thermosome; PFAM: chaperonin Cpn60/TCP-1. (539 aa) |
| | Aboo_1149 | PFAM: NMD3 family protein; KEGG: mvu:Metvu_1100 NMD3 family protein. (332 aa) |
| | nop10 | RNA-binding protein Nop10p; Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA. (60 aa) |
| | eif2a | Translation initiation factor 2, alpha subunit; eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Belongs to the eIF-2-alpha family. (254 aa) |
| | rps27e | PFAM: Ribosomal protein S27E; KEGG: afu:AF1334 30S ribosomal protein S27e. (60 aa) |
| | rpl44e | Ribosomal protein L44E; Binds to the 23S rRNA. (94 aa) |
| | Aboo_1171 | PFAM: protein of unknown function ATP binding; KEGG: tvo:TVN0036 GTPase. (255 aa) |
| | polC | DNA polymerase II, large subunit DP2; Possesses two activities: a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase. (1090 aa) |
| | rpl7ae | Ribosomal protein L7Ae/L30e/S12e/Gadd45; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. (121 aa) |
| | rps28e | PFAM: Ribosomal protein S28e; KEGG: pto:PTO1281 30S ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family. (69 aa) |
| | rpl24e | Ribosomal protein L24E; Binds to the 23S rRNA. (81 aa) |
| | Aboo_1239 | PFAM: nucleoside diphosphate kinase; KEGG: tac:Ta1113 nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase. (148 aa) |
| | rps17e | PFAM: Ribosomal protein S17e; KEGG: tko:TK2292 30S ribosomal protein S17e; Belongs to the eukaryotic ribosomal protein eS17 family. (68 aa) |
| | rpl18a | PFAM: Ribosomal LX protein; KEGG: pab:PAB7388 50S ribosomal protein LX. (85 aa) |
| | ftsY | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). (307 aa) |
| | eif1a | Translation initiation factor eIF-1A; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits. (102 aa) |
| | Aboo_1280 | PFAM: RIO-like kinase; KEGG: rci:LRC287 putative serine/threonine protein kinase. (254 aa) |
| | Aboo_1281 | TIGRFAM: KH domain protein; PFAM: K Homology, type 1, subgroup; KEGG: tsi:TSIB_1106 RNA-binding protein, containing KH domain; SMART: KH domain protein. (182 aa) |
| | Aboo_1287 | Thermosome; KEGG: tac:Ta0980 thermosome, alpha chain; TIGRFAM: thermosome; PFAM: chaperonin Cpn60/TCP-1. (551 aa) |
| | rps2 | KEGG: pto:PTO0517 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (199 aa) |
| | Aboo_1312 | PFAM: Ribosomal protein L40e; KEGG: mka:MK0641 50S ribosomal protein L40e. (49 aa) |
| | grpE | GrpE protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent i [...] (150 aa) |
| | dnaK | Chaperone protein DnaK; Acts as a chaperone. (614 aa) |
| | dnaJ | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] (368 aa) |
| | Aboo_1375 | PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: tvo:TVN1209 single-stranded DNA-specific exonuclease. (420 aa) |
| | rps15 | PFAM: Ribosomal S13S15 domain protein; ribosomal protein S15; KEGG: ton:TON_0517 30S ribosomal protein S15P. (151 aa) |
| | rpoL | DNA-directed RNA polymerase subunit L; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family. (93 aa) |
| | pan | 26S proteasome subunit P45 family; ATPase which is responsible for recognizing, binding, unfolding and translocation of substrate proteins into the archaeal 20S proteasome core particle. Is essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C- termini of the proteasomal ATPase function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. Unfolding activity requires energy from ATP hydrolysis, whereas ATP binding alone promotes ATPase-2 [...] (394 aa) |
| | Aboo_1390 | PFAM: Ribosomal protein L37e; KEGG: tvo:TVN0355 50S ribosomal protein L37e. (55 aa) |
| | Aboo_1391 | Like-Sm ribonucleoprotein core; KEGG: tac:Ta1240 small nuclear ribonucleoprotein; PFAM: Like-Sm ribonucleoprotein core; SMART: Sm-family ribonucleoprotein. (75 aa) |
| | rps13 | Ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family. (148 aa) |
| | rps4 | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (187 aa) |
| | Aboo_1398 | KEGG: tac:Ta1031 30S ribosomal protein S11P; TIGRFAM: ribosomal protein S11P; PFAM: ribosomal protein S11. (128 aa) |
| | rpoD | RNA polymerase insert; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoD/eukaryotic RPB3 RNA polymerase subunit family. (273 aa) |
| | Aboo_1408 | TIGRFAM: peptidase S16, Lon-like protease; PFAM: peptidase S16 lon domain protein; KEGG: tac:Ta1081 ATP-dependent protease Lon; SMART: AAA ATPase; Belongs to the peptidase S16 family. (631 aa) |
| | rps8e | KEGG: mth:MTH207 30S ribosomal protein S8e; TIGRFAM: ribosomal protein S8e; PFAM: Ribosomal protein S8E. (126 aa) |
| | Aboo_1413 | PFAM: Ribonucleoprotein complex SRP, Srp19 component; KEGG: mka:MK1551 signal recognition particle protein SRP19. (87 aa) |
| | glpK | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate. (479 aa) |
| | rpl18e | PFAM: ribosomal protein L15; KEGG: mae:Maeo_1097 50S ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family. (117 aa) |
| | rpl13 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (138 aa) |
| | rps9 | KEGG: afu:AF1129 30S ribosomal protein S9P; TIGRFAM: ribosomal protein S9P; PFAM: ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (132 aa) |
| | rpoN | RNA polymerase, N/8 Kd subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoN/eukaryotic RPB10 RNA polymerase subunit family. (76 aa) |
| | truB | Pseudouridylate synthase TruB domain protein; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. (286 aa) |
| | cmk | TIGRFAM: cytidylate kinase; KEGG: sto:ST0408 cytidylate kinase; PFAM: adenylate kinase. (179 aa) |
| | Aboo_1496 | PFAM: protein of unknown function DUF106 transmembrane; KEGG: tvo:TVN0350 hypothetical protein. (223 aa) |
| | secY | Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. (599 aa) |
| | Aboo_1499 | PFAM: ribosomal protein L15; KEGG: msi:Msm_0739 50S ribosomal protein L15P. (141 aa) |
| | rpl30 | KEGG: pfu:PF1803 50S ribosomal protein L30P; TIGRFAM: ribosomal protein L30P; PFAM: ribosomal protein L30. (158 aa) |
| | rps5 | Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy. (217 aa) |
| | rpl18 | Ribosomal protein L18P/L5E; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (165 aa) |
| | rpl19e | Ribosomal protein L19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (150 aa) |
| | rpl32e | PFAM: Ribosomal protein L32e; KEGG: pto:PTO0657 50S ribosomal protein L32e; Belongs to the eukaryotic ribosomal protein eL32 family. (137 aa) |
| | Aboo_1505 | KEGG: mth:MTH19 50S ribosomal protein L6P; TIGRFAM: ribosomal protein L6P; PFAM: Ribosomal protein L6, alpha-beta domain. (178 aa) |
| | Aboo_1506 | PFAM: ribosomal protein S8; KEGG: tvo:TVN0340 30S ribosomal protein S8P. (129 aa) |
| | Aboo_1507 | PFAM: ribosomal protein S14; KEGG: tac:Ta1257 30S ribosomal protein S14P. (53 aa) |
| | Aboo_1508 | PFAM: ribosomal protein L5; KEGG: pto:PTO0653 50S ribosomal protein L5P. (178 aa) |
| | Aboo_1509 | KEGG: mth:MTH15 30S ribosomal protein S4e; PFAM: Ribosomal protein S4E, central domain protein; Ribosomal protein S4E domain protein; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein. (236 aa) |
| | Aboo_1510 | TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; KEGG: mka:MK1219 50S ribosomal protein L24P; SMART: KOW domain protein. (156 aa) |
| | Aboo_1511 | KEGG: tvo:TVN0335 50S ribosomal protein L14P; TIGRFAM: 50S ribosomal protein L14P; PFAM: ribosomal protein L14b/L23e. (135 aa) |
| | Aboo_1512 | KEGG: mka:MK1217 30S ribosomal protein S17P; TIGRFAM: ribosomal protein S17P; PFAM: ribosomal protein S17. (109 aa) |
| | Aboo_1514 | KEGG: tvo:TVN0331 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29. (64 aa) |
| | Aboo_1515 | TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; KEGG: mja:MJ0461 30S ribosomal protein S3P; SMART: KH domain protein. (237 aa) |
| | Aboo_1516 | KEGG: tac:Ta1266 50S ribosomal protein L22P; TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17. (151 aa) |
| | Aboo_1517 | KEGG: pto:PTO0644 30S ribosomal protein S19P; TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15. (151 aa) |
| | Aboo_1518 | PFAM: ribosomal protein L2; KEGG: mth:MTH5 50S ribosomal protein L2P. (234 aa) |
| | rpl23 | Ribosomal protein L23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family. (87 aa) |
| | rpl4 | 50S ribosomal protein L4P; Forms part of the polypeptide exit tunnel. (254 aa) |
| | rpl3 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (340 aa) |
| | Aboo_1533 | PFAM: peptidylprolyl isomerase FKBP-type; KEGG: mvu:Metvu_1394 peptidylprolyl isomerase FKBP-type. (273 aa) |
