(12 nodes) Mixed, incl. Virion assembly, and Terminase large subunit GpA, endonuclease domain network (Bradyrhizobium liaoningense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KYK45360.1	Major capsid protein E; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa)
	KYK45362.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the peptidase S14 family. (338 aa)
	KYK45363.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (462 aa)
	A1D31_36030	Major capsid protein E; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa)
	KYK44727.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (529 aa)
	KYK44728.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (74 aa)
	KYK44729.1	Terminase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (602 aa)
	KYK44730.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (167 aa)
	KYK44735.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (209 aa)
	KYK44672.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (214 aa)
	KYK44300.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (602 aa)
	KYK44302.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (523 aa)

Your Current Organism:

Bradyrhizobium liaoningense

NCBI taxonomy Id: 43992
Other names: ATCC 700350, B. liaoningense, Bradyrhizobium sp. 4345, Bradyrhizobium sp. Spr3-7, CIP 104858, LMG 18230, LMG:18230, NBRC 100396, strain 2281

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1D31_36030	KYK44300.1	A1D31_36030	A1D31_36755	Major capsid protein E; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.945
A1D31_36030	KYK44302.1	A1D31_36030	A1D31_36765	Major capsid protein E; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.759
A1D31_36030	KYK44672.1	A1D31_36030	A1D31_36455	Major capsid protein E; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.623
A1D31_36030	KYK44727.1	A1D31_36030	A1D31_36040	Major capsid protein E; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.930
A1D31_36030	KYK44728.1	A1D31_36030	A1D31_36045	Major capsid protein E; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.692
A1D31_36030	KYK44729.1	A1D31_36030	A1D31_36050	Major capsid protein E; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Terminase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.982
A1D31_36030	KYK44730.1	A1D31_36030	A1D31_36055	Major capsid protein E; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.631
A1D31_36030	KYK44735.1	A1D31_36030	A1D31_36095	Major capsid protein E; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.622
A1D31_36030	KYK45360.1	A1D31_36030	A1D31_34995	Major capsid protein E; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Major capsid protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.796
A1D31_36030	KYK45362.1	A1D31_36030	A1D31_35005	Major capsid protein E; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the peptidase S14 family.	0.502
A1D31_36030	KYK45363.1	A1D31_36030	A1D31_35010	Major capsid protein E; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.782
KYK44300.1	A1D31_36030	A1D31_36755	A1D31_36030	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Major capsid protein E; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.945
KYK44300.1	KYK44302.1	A1D31_36755	A1D31_36765	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.907
KYK44300.1	KYK44672.1	A1D31_36755	A1D31_36455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.741
KYK44300.1	KYK44727.1	A1D31_36755	A1D31_36040	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.838
KYK44300.1	KYK44735.1	A1D31_36755	A1D31_36095	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.741
KYK44300.1	KYK45360.1	A1D31_36755	A1D31_34995	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Major capsid protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.792
KYK44300.1	KYK45362.1	A1D31_36755	A1D31_35005	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the peptidase S14 family.	0.668
KYK44300.1	KYK45363.1	A1D31_36755	A1D31_35010	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.838
KYK44302.1	A1D31_36030	A1D31_36765	A1D31_36030	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Major capsid protein E; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.759

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