STRINGSTRING
KYK48365.1 KYK48365.1 KYK48466.1 KYK48466.1 ftsH ftsH KYK48533.1 KYK48533.1 KYK48919.1 KYK48919.1 smc smc KYK48760.1 KYK48760.1 cueA cueA dnaK dnaK KYK46793.1 KYK46793.1 hslU hslU KYK46941.1 KYK46941.1 KYK46974.1 KYK46974.1 ftsH-2 ftsH-2 ruvB ruvB ruvA ruvA KYK45701.1 KYK45701.1 KYK44837.1 KYK44837.1 KYK44960.1 KYK44960.1 uvrA uvrA KYK45019.1 KYK45019.1 KYK44416.1 KYK44416.1 KYK44582.1 KYK44582.1 KYK44101.1 KYK44101.1 KYK43652.1 KYK43652.1 KYK43328.1 KYK43328.1 lon lon KYK50474.1 KYK50474.1 KYK50186.1 KYK50186.1 KYK49943.1 KYK49943.1 KYK50126.1 KYK50126.1 KYK50140.1 KYK50140.1 kdpB kdpB fliI fliI KYK49600.1 KYK49600.1 clpA clpA mutL mutL ychF ychF uvrB uvrB KYK49396.1 KYK49396.1 clpX clpX lon-2 lon-2 KYK48952.1 KYK48952.1 KYK48025.1 KYK48025.1 KYK47876.1 KYK47876.1 htpG htpG fliI-2 fliI-2 KYK47419.1 KYK47419.1 KYK47396.1 KYK47396.1 KYK46352.1 KYK46352.1 KYK46230.1 KYK46230.1 KYK46190.1 KYK46190.1 clpB clpB fliI-3 fliI-3 KYK44729.1 KYK44729.1 KYK44741.1 KYK44741.1 KYK44666.1 KYK44666.1 KYK44679.1 KYK44679.1 KYK44300.1 KYK44300.1 fliI-4 fliI-4 KYK43524.1 KYK43524.1 A1D31_38980 A1D31_38980
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
KYK48365.1phenylacetate-CoA oxygenase subunit PaaJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (167 aa)
KYK48466.1Nitrogen fixation protein FixI; Derived by automated computational analysis using gene prediction method: Protein Homology. (729 aa)
ftsHCell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. (613 aa)
KYK48533.1Magnesium-translocating P-type ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (846 aa)
KYK48919.1CbbX protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
smcChromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1154 aa)
KYK48760.1AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)
cueAHaloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (815 aa)
dnaKMolecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. (633 aa)
KYK46793.1CtpF protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (429 aa)
hslUATP-dependent protease ATP-binding subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. (434 aa)
KYK46941.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
KYK46974.1ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (395 aa)
ftsH-2Cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. (640 aa)
ruvBHolliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (350 aa)
ruvAHolliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (205 aa)
KYK45701.1CtpF protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (422 aa)
KYK44837.1ClpV1 family T6SS ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ClpA/ClpB family. (879 aa)
KYK44960.1ATP-dependent DNA helicase RecG; Derived by automated computational analysis using gene prediction method: Protein Homology. (702 aa)
uvrAABC-ATPase UvrA; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (994 aa)
KYK45019.1ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
KYK44416.1ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)
KYK44582.1Sodium:proton antiporter; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. (378 aa)
KYK44101.1Cobaltochelatase subunit CobS; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)
KYK43652.1ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
KYK43328.1AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)
lonEndopeptidase La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (793 aa)
KYK50474.1Septum site-determining protein MinD; ATPase; with MinC inhibits cell division by blocking formation of the polar Z ring septums; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
KYK50186.1Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (503 aa)
KYK49943.1AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (445 aa)
KYK50126.1Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (761 aa)
KYK50140.1ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (878 aa)
kdpBPotassium-transporting ATPase subunit B; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system. Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IA subfamily. (705 aa)
fliIFlagellar protein export ATPase FliI; Involved in type III protein export during flagellum assembly; Derived by automated computational analysis using gene prediction method: Protein Homology. (446 aa)
KYK49600.1DNA helicase; Unwinds double stranded DNA; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa)
clpAATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ClpA/ClpB family. (802 aa)
mutLDNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (603 aa)
ychFGTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (365 aa)
uvrBExcinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (833 aa)
KYK49396.1AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (881 aa)
clpXATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (423 aa)
lon-2Endopeptidase La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (807 aa)
KYK48952.1ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)
KYK48025.1Negative regulator of septation ring formation; Derived by automated computational analysis using gene prediction method: Protein Homology. (1881 aa)
KYK47876.1ATP-dependent protease; Derived by automated computational analysis using gene prediction method: Protein Homology. (408 aa)
htpGMolecular chaperone HtpG; Molecular chaperone. Has ATPase activity. (625 aa)
fliI-2Flagellar protein export ATPase FliI; Involved in type III protein export during flagellum assembly; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa)
KYK47419.1AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
KYK47396.1Energy-dependent translational throttle protein EttA; Derived by automated computational analysis using gene prediction method: Protein Homology. (549 aa)
KYK46352.1SUF system Fe-S cluster assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa)
KYK46230.1AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the AAA ATPase family. (356 aa)
KYK46190.1ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (685 aa)
clpBATP-dependent chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. (879 aa)
fliI-3EscN/YscN/HrcN family type III secretion system ATPase; Involved in type III protein export during flagellum assembly; Derived by automated computational analysis using gene prediction method: Protein Homology. (420 aa)
KYK44729.1Terminase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (602 aa)
KYK44741.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (511 aa)
KYK44666.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (511 aa)
KYK44679.1Terminase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (646 aa)
KYK44300.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (602 aa)
fliI-4EscN/YscN/HrcN family type III secretion system ATPase; Involved in type III protein export during flagellum assembly; Derived by automated computational analysis using gene prediction method: Protein Homology. (451 aa)
KYK43524.1Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (543 aa)
A1D31_38980tRNA-Val; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (437 aa)
Your Current Organism:
Bradyrhizobium liaoningense
NCBI taxonomy Id: 43992
Other names: ATCC 700350, B. liaoningense, Bradyrhizobium sp. 4345, Bradyrhizobium sp. Spr3-7, CIP 104858, LMG 18230, LMG:18230, NBRC 100396, strain 2281
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