STRINGSTRING
SDG93922.1 SDG93922.1 SDG93944.1 SDG93944.1 SDG93970.1 SDG93970.1 trmJ trmJ SDG94019.1 SDG94019.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SDG93922.1Hypothetical protein. (372 aa)
SDG93944.1Transcriptional regulator of competence genes, TfoX/Sxy family. (111 aa)
SDG93970.1Uncharacterized conserved protein. (143 aa)
trmJtRNA/rRNA methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. (267 aa)
SDG94019.1EamA domain-containing membrane protein RarD. (315 aa)
Your Current Organism:
Pelagibacterium luteolum
NCBI taxonomy Id: 440168
Other names: CELMS EEUT 1C1627, CGMCC 1.10267, Devosia sp. 1_C16_27, Hyphomicrobiaceae bacterium 1_C16_27, JCM 16552, P. luteolum, Pelagibacterium luteolum Xu et al. 2011, strain 1_C16_27
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