(14 nodes) Mss4-like superfamily network (Pelagibacterium luteolum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SDH08877.1	Uncharacterized conserved protein. (177 aa)
	SDG24466.1	Uncharacterized conserved protein. (124 aa)
	msrB	Peptide-methionine (R)-S-oxide reductase; Belongs to the MsrB Met sulfoxide reductase family. (136 aa)
	SDG38906.1	Uncharacterized conserved protein. (134 aa)
	SDG33780.1	Uncharacterized conserved protein. (150 aa)
	SDG33797.1	Uncharacterized conserved protein. (162 aa)
	SDG33811.1	Uncharacterized conserved protein. (166 aa)
	SDG33828.1	Uncharacterized conserved protein. (155 aa)
	SDG48898.1	Uncharacterized conserved protein. (131 aa)
	SDG47099.1	Uncharacterized conserved protein. (131 aa)
	SDG61471.1	Peptide-methionine (R)-S-oxide reductase. (160 aa)
	msrB-2	Peptide-methionine (R)-S-oxide reductase. (146 aa)
	SDG75847.1	Uncharacterized conserved protein. (135 aa)
	SDG93970.1	Uncharacterized conserved protein. (143 aa)

Your Current Organism:

Pelagibacterium luteolum

NCBI taxonomy Id: 440168
Other names: CELMS EEUT 1C1627, CGMCC 1.10267, Devosia sp. 1_C16_27, Hyphomicrobiaceae bacterium 1_C16_27, JCM 16552, P. luteolum, Pelagibacterium luteolum Xu et al. 2011, strain 1_C16_27

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDG24466.1	SDG47099.1	SAMN04487974_101616	SAMN04487974_10378	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.772
SDG33780.1	SDG33797.1	SAMN04487974_10280	SAMN04487974_10281	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.804
SDG33780.1	SDG33811.1	SAMN04487974_10280	SAMN04487974_10282	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.791
SDG33780.1	SDG33828.1	SAMN04487974_10280	SAMN04487974_10283	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.804
SDG33780.1	SDG38906.1	SAMN04487974_10280	SAMN04487974_102349	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.762
SDG33780.1	SDG47099.1	SAMN04487974_10280	SAMN04487974_10378	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.436
SDG33797.1	SDG33780.1	SAMN04487974_10281	SAMN04487974_10280	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.804
SDG33797.1	SDG33811.1	SAMN04487974_10281	SAMN04487974_10282	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.812
SDG33797.1	SDG33828.1	SAMN04487974_10281	SAMN04487974_10283	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.803
SDG33797.1	SDG38906.1	SAMN04487974_10281	SAMN04487974_102349	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.757
SDG33797.1	SDG47099.1	SAMN04487974_10281	SAMN04487974_10378	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.458
SDG33811.1	SDG33780.1	SAMN04487974_10282	SAMN04487974_10280	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.791
SDG33811.1	SDG33797.1	SAMN04487974_10282	SAMN04487974_10281	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.812
SDG33811.1	SDG33828.1	SAMN04487974_10282	SAMN04487974_10283	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.810
SDG33811.1	SDG38906.1	SAMN04487974_10282	SAMN04487974_102349	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.766
SDG33811.1	SDG47099.1	SAMN04487974_10282	SAMN04487974_10378	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.503
SDG33828.1	SDG33780.1	SAMN04487974_10283	SAMN04487974_10280	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.804
SDG33828.1	SDG33797.1	SAMN04487974_10283	SAMN04487974_10281	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.803
SDG33828.1	SDG33811.1	SAMN04487974_10283	SAMN04487974_10282	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.810
SDG33828.1	SDG38906.1	SAMN04487974_10283	SAMN04487974_102349	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.686

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