48 items (Talaromyces marneffei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PMAA_036980	50S ribosomal subunit L7, putative. (351 aa)
	PMAA_028180	50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (300 aa)
	PMAA_019250	Mitochondrial large ribosomal subunit L49, putative. (194 aa)
	PMAA_028710	37S ribosomal protein S18, putative. (211 aa)
	PMAA_019680	Ribosomal protein S15, putative. (306 aa)
	PMAA_020470	Uncharacterized protein. (175 aa)
	PMAA_030030	60S ribosomal protein L6, putative; Belongs to the universal ribosomal protein uL6 family. (253 aa)
	PMAA_030250	Uncharacterized protein. (60 aa)
	PMAA_030910	Mitochondrial ribosomal protein L11, putative; Belongs to the universal ribosomal protein uL11 family. (153 aa)
	PMAA_032400	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family. (418 aa)
	PMAA_033660	50S ribosomal protein L4. (298 aa)
	PMAA_033910	Mitochondrial ribosomal protein L43, putative. (137 aa)
	PMAA_034400	50S ribosomal subunit L30. (347 aa)
	PMAA_025310	50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family. (202 aa)
	PMAA_026120	40S ribosomal protein S2, putative. (358 aa)
	PMAA_073360	37S ribosomal protein S12. (208 aa)
	PMAA_068210	60S ribosomal protein L3. (404 aa)
	PMAA_078210	50S ribosomal protein Mrp49. (207 aa)
	PMAA_079070	Uncharacterized protein. (306 aa)
	PMAA_079620	37S ribosomal protein S16. (107 aa)
	PMAA_080630	37S ribosomal protein Rsm24, putative. (401 aa)
	PMAA_082210	Nucleoside diphosphate kinase. (153 aa)
	PMAA_083200	Mitochondrial ribosomal protein, putative. (219 aa)
	PMAA_085260	Mitochondrial ribosomal protein DAP3, putative. (522 aa)
	PMAA_086460	60S ribosomal protein L23. (233 aa)
	PMAA_092330	Mitochondrial large ribosomal subunit protein L16, putative; Belongs to the universal ribosomal protein uL16 family. (224 aa)
	PMAA_093620	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (342 aa)
	PMAA_094660	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (116 aa)
	PMAA_097540	50S ribosomal subunit protein L15. (317 aa)
	PMAA_097610	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (440 aa)
	PMAA_097720	37S ribosomal protein Mrp17. (149 aa)
	PMAA_054630	30S ribosomal protein S7, putative. (364 aa)
	PMAA_054680	50S ribosomal protein YmL27. (162 aa)
	PMAA_058350	Uncharacterized protein. (233 aa)
	PMAA_060080	40S ribosomal protein S15, putative; Belongs to the universal ribosomal protein uS19 family. (153 aa)
	PMAA_060310	Ribosome recycling factor, putative. (293 aa)
	PMAA_052810	Ribosomal protein L26. (135 aa)
	PMAA_047680	50S ribosomal protein L13. (175 aa)
	PMAA_040440	50S ribosomal protein L30, putative. (98 aa)
	PMAA_040690	50S ribosomal protein L24. (237 aa)
	PMAA_042140	50S ribosomal protein L2. (409 aa)
	PMAA_045250	40S ribosomal protein S14, putative. (113 aa)
	PMAA_043120	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (217 aa)
	PMAA_045810	Peptidyl-tRNA hydrolase domain protein. (196 aa)
	PMAA_048360	50S ribosomal protein L4. (246 aa)
	PMAA_044440	37S ribosomal protein S11, putative. (241 aa)
	PMAA_011310	37 ribosomal protein Rsm10, putative. (277 aa)
	PMAA_012070	37S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (320 aa)

Your Current Organism:

Talaromyces marneffei

NCBI taxonomy Id: 441960
Other names: Penicillium marneffei ATCC 18224, T. marneffei ATCC 18224, Talaromyces marneffei ATCC 18224

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PMAA_011310	PMAA_012070	B6QV79	B6QVD0	37 ribosomal protein Rsm10, putative.	37S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
PMAA_011310	PMAA_019250	B6QV79	B6Q338	37 ribosomal protein Rsm10, putative.	Mitochondrial large ribosomal subunit L49, putative.	0.975
PMAA_011310	PMAA_019680	B6QV79	B6Q3G1	37 ribosomal protein Rsm10, putative.	Ribosomal protein S15, putative.	0.999
PMAA_011310	PMAA_020470	B6QV79	B6Q3W3	37 ribosomal protein Rsm10, putative.	Uncharacterized protein.	0.987
PMAA_011310	PMAA_025310	B6QV79	B6Q6Y6	37 ribosomal protein Rsm10, putative.	50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.995
PMAA_011310	PMAA_026120	B6QV79	B6Q7L1	37 ribosomal protein Rsm10, putative.	40S ribosomal protein S2, putative.	0.999
PMAA_011310	PMAA_028180	B6QV79	B6Q2N7	37 ribosomal protein Rsm10, putative.	50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.990
PMAA_011310	PMAA_028710	B6QV79	B6Q387	37 ribosomal protein Rsm10, putative.	37S ribosomal protein S18, putative.	0.996
PMAA_011310	PMAA_030030	B6QV79	B6Q413	37 ribosomal protein Rsm10, putative.	60S ribosomal protein L6, putative; Belongs to the universal ribosomal protein uL6 family.	0.961
PMAA_011310	PMAA_030250	B6QV79	B6Q436	37 ribosomal protein Rsm10, putative.	Uncharacterized protein.	0.994
PMAA_011310	PMAA_030910	B6QV79	B6Q4G9	37 ribosomal protein Rsm10, putative.	Mitochondrial ribosomal protein L11, putative; Belongs to the universal ribosomal protein uL11 family.	0.951
PMAA_011310	PMAA_032400	B6QV79	B6Q5H5	37 ribosomal protein Rsm10, putative.	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.999
PMAA_011310	PMAA_033660	B6QV79	B6Q687	37 ribosomal protein Rsm10, putative.	50S ribosomal protein L4.	0.990
PMAA_011310	PMAA_033910	B6QV79	B6Q6B3	37 ribosomal protein Rsm10, putative.	Mitochondrial ribosomal protein L43, putative.	0.992
PMAA_011310	PMAA_034400	B6QV79	B6Q6N4	37 ribosomal protein Rsm10, putative.	50S ribosomal subunit L30.	0.972
PMAA_011310	PMAA_036980	B6QV79	B6Q1Q6	37 ribosomal protein Rsm10, putative.	50S ribosomal subunit L7, putative.	0.961
PMAA_011310	PMAA_040440	B6QV79	B6QPY1	37 ribosomal protein Rsm10, putative.	50S ribosomal protein L30, putative.	0.972
PMAA_011310	PMAA_040690	B6QV79	B6QQ70	37 ribosomal protein Rsm10, putative.	50S ribosomal protein L24.	0.981
PMAA_011310	PMAA_042140	B6QV79	B6QQR3	37 ribosomal protein Rsm10, putative.	50S ribosomal protein L2.	0.986
PMAA_011310	PMAA_043120	B6QV79	B6QR62	37 ribosomal protein Rsm10, putative.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.903