22 items (Talaromyces marneffei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PMAA_036980	50S ribosomal subunit L7, putative. (351 aa)
	PMAA_028180	50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (300 aa)
	PMAA_030030	60S ribosomal protein L6, putative; Belongs to the universal ribosomal protein uL6 family. (253 aa)
	PMAA_030250	Uncharacterized protein. (60 aa)
	PMAA_030910	Mitochondrial ribosomal protein L11, putative; Belongs to the universal ribosomal protein uL11 family. (153 aa)
	PMAA_033660	50S ribosomal protein L4. (298 aa)
	PMAA_025310	50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family. (202 aa)
	PMAA_079070	Uncharacterized protein. (306 aa)
	PMAA_083200	Mitochondrial ribosomal protein, putative. (219 aa)
	PMAA_086460	60S ribosomal protein L23. (233 aa)
	PMAA_092330	Mitochondrial large ribosomal subunit protein L16, putative; Belongs to the universal ribosomal protein uL16 family. (224 aa)
	PMAA_093620	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (342 aa)
	PMAA_094660	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (116 aa)
	PMAA_097540	50S ribosomal subunit protein L15. (317 aa)
	PMAA_097610	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (440 aa)
	PMAA_060080	40S ribosomal protein S15, putative; Belongs to the universal ribosomal protein uS19 family. (153 aa)
	PMAA_052810	Ribosomal protein L26. (135 aa)
	PMAA_047680	50S ribosomal protein L13. (175 aa)
	PMAA_040690	50S ribosomal protein L24. (237 aa)
	PMAA_042140	50S ribosomal protein L2. (409 aa)
	PMAA_043120	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (217 aa)
	PMAA_012070	37S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (320 aa)

Your Current Organism:

Talaromyces marneffei

NCBI taxonomy Id: 441960
Other names: Penicillium marneffei ATCC 18224, T. marneffei ATCC 18224, Talaromyces marneffei ATCC 18224

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PMAA_012070	PMAA_025310	B6QVD0	B6Q6Y6	37S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.999
PMAA_012070	PMAA_028180	B6QVD0	B6Q2N7	37S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.999
PMAA_012070	PMAA_030030	B6QVD0	B6Q413	37S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	60S ribosomal protein L6, putative; Belongs to the universal ribosomal protein uL6 family.	0.997
PMAA_012070	PMAA_030250	B6QVD0	B6Q436	37S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein.	0.999
PMAA_012070	PMAA_030910	B6QVD0	B6Q4G9	37S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	Mitochondrial ribosomal protein L11, putative; Belongs to the universal ribosomal protein uL11 family.	0.997
PMAA_012070	PMAA_033660	B6QVD0	B6Q687	37S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	50S ribosomal protein L4.	0.997
PMAA_012070	PMAA_036980	B6QVD0	B6Q1Q6	37S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	50S ribosomal subunit L7, putative.	0.993
PMAA_012070	PMAA_040690	B6QVD0	B6QQ70	37S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	50S ribosomal protein L24.	0.999
PMAA_012070	PMAA_042140	B6QVD0	B6QQR3	37S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	50S ribosomal protein L2.	0.998
PMAA_012070	PMAA_043120	B6QVD0	B6QR62	37S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.977
PMAA_012070	PMAA_047680	B6QVD0	B6QP95	37S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	50S ribosomal protein L13.	0.998
PMAA_012070	PMAA_052810	B6QVD0	B6QNI3	37S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	Ribosomal protein L26.	0.999
PMAA_012070	PMAA_060080	B6QVD0	B6QMA2	37S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	40S ribosomal protein S15, putative; Belongs to the universal ribosomal protein uS19 family.	0.999
PMAA_012070	PMAA_079070	B6QVD0	B6QE09	37S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein.	0.994
PMAA_012070	PMAA_083200	B6QVD0	B6QFT0	37S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	Mitochondrial ribosomal protein, putative.	0.999
PMAA_012070	PMAA_086460	B6QVD0	B6QGS8	37S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	60S ribosomal protein L23.	0.999
PMAA_012070	PMAA_092330	B6QVD0	B6QGV3	37S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	Mitochondrial large ribosomal subunit protein L16, putative; Belongs to the universal ribosomal protein uL16 family.	0.997
PMAA_012070	PMAA_093620	B6QVD0	B6QHA1	37S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.998
PMAA_012070	PMAA_094660	B6QVD0	B6QHL5	37S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.996
PMAA_012070	PMAA_097540	B6QVD0	B6QIG9	37S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	50S ribosomal subunit protein L15.	0.997