8 items (Talaromyces marneffei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PMAA_032400	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family. (418 aa)
	PMAA_026120	40S ribosomal protein S2, putative. (358 aa)
	PMAA_078210	50S ribosomal protein Mrp49. (207 aa)
	PMAA_079620	37S ribosomal protein S16. (107 aa)
	PMAA_080630	37S ribosomal protein Rsm24, putative. (401 aa)
	PMAA_085260	Mitochondrial ribosomal protein DAP3, putative. (522 aa)
	PMAA_044440	37S ribosomal protein S11, putative. (241 aa)
	PMAA_011310	37 ribosomal protein Rsm10, putative. (277 aa)

Your Current Organism:

Talaromyces marneffei

NCBI taxonomy Id: 441960
Other names: Penicillium marneffei ATCC 18224, T. marneffei ATCC 18224, Talaromyces marneffei ATCC 18224

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PMAA_011310	PMAA_026120	B6QV79	B6Q7L1	37 ribosomal protein Rsm10, putative.	40S ribosomal protein S2, putative.	0.999
PMAA_011310	PMAA_032400	B6QV79	B6Q5H5	37 ribosomal protein Rsm10, putative.	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.999
PMAA_011310	PMAA_044440	B6QV79	B6QS37	37 ribosomal protein Rsm10, putative.	37S ribosomal protein S11, putative.	0.999
PMAA_011310	PMAA_078210	B6QV79	B6QDK6	37 ribosomal protein Rsm10, putative.	50S ribosomal protein Mrp49.	0.998
PMAA_011310	PMAA_079620	B6QV79	B6QED4	37 ribosomal protein Rsm10, putative.	37S ribosomal protein S16.	0.999
PMAA_011310	PMAA_080630	B6QV79	B6QF10	37 ribosomal protein Rsm10, putative.	37S ribosomal protein Rsm24, putative.	0.999
PMAA_011310	PMAA_085260	B6QV79	B6QGE4	37 ribosomal protein Rsm10, putative.	Mitochondrial ribosomal protein DAP3, putative.	0.999
PMAA_026120	PMAA_011310	B6Q7L1	B6QV79	40S ribosomal protein S2, putative.	37 ribosomal protein Rsm10, putative.	0.999
PMAA_026120	PMAA_032400	B6Q7L1	B6Q5H5	40S ribosomal protein S2, putative.	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.999
PMAA_026120	PMAA_044440	B6Q7L1	B6QS37	40S ribosomal protein S2, putative.	37S ribosomal protein S11, putative.	0.999
PMAA_026120	PMAA_078210	B6Q7L1	B6QDK6	40S ribosomal protein S2, putative.	50S ribosomal protein Mrp49.	0.998
PMAA_026120	PMAA_079620	B6Q7L1	B6QED4	40S ribosomal protein S2, putative.	37S ribosomal protein S16.	0.999
PMAA_026120	PMAA_080630	B6Q7L1	B6QF10	40S ribosomal protein S2, putative.	37S ribosomal protein Rsm24, putative.	0.999
PMAA_026120	PMAA_085260	B6Q7L1	B6QGE4	40S ribosomal protein S2, putative.	Mitochondrial ribosomal protein DAP3, putative.	0.999
PMAA_032400	PMAA_011310	B6Q5H5	B6QV79	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	37 ribosomal protein Rsm10, putative.	0.999
PMAA_032400	PMAA_026120	B6Q5H5	B6Q7L1	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S2, putative.	0.999
PMAA_032400	PMAA_044440	B6Q5H5	B6QS37	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	37S ribosomal protein S11, putative.	0.999
PMAA_032400	PMAA_078210	B6Q5H5	B6QDK6	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	50S ribosomal protein Mrp49.	0.999
PMAA_032400	PMAA_079620	B6Q5H5	B6QED4	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	37S ribosomal protein S16.	0.999
PMAA_032400	PMAA_080630	B6Q5H5	B6QF10	37S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	37S ribosomal protein Rsm24, putative.	0.999