32 items (Talaromyces marneffei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PMAA_052280	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	PMAA_060080	40S ribosomal protein S15, putative; Belongs to the universal ribosomal protein uS19 family. (153 aa)
	PMAA_057590	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (161 aa)
	PMAA_057510	Uncharacterized protein. (311 aa)
	PMAA_055530	40S ribosomal protein S19. (149 aa)
	PMAA_054600	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (200 aa)
	PMAA_090620	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (62 aa)
	rps1	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family. (256 aa)
	PMAA_081890	G-protein comlpex beta subunit CpcB. (316 aa)
	PMAA_078260	40S ribosomal protein S10b. (161 aa)
	PMAA_066660	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (98 aa)
	PMAA_008870	40S ribosomal protein S10a. (116 aa)
	PMAA_003310	40S ribosomal protein S27. (82 aa)
	PMAA_004160	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner. (687 aa)
	PMAA_003040	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (261 aa)
	PMAA_047150	40S ribosomal protein S21; Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability. (86 aa)
	PMAA_047690	40S ribosomal protein Rps16, putative; Belongs to the universal ribosomal protein uS9 family. (143 aa)
	PMAA_047730	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	PMAA_065840	40S ribosomal protein S22; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	PMAA_002720	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (191 aa)
	PMAA_040590	Uncharacterized protein. (264 aa)
	PMAA_009840	Ribosomal protein S28e. (68 aa)
	PMAA_073940	40S ribosomal protein S5, putative; Belongs to the universal ribosomal protein uS7 family. (213 aa)
	PMAA_073380	Topisomerase II associated protein (Pat1), putative. (816 aa)
	PMAA_026340	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (119 aa)
	PMAA_016360	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family. (259 aa)
	PMAA_025340	Ribosomal protein S23 (S12); Belongs to the universal ribosomal protein uS12 family. (145 aa)
	PMAA_024830	40S ribosomal protein S3, putative; Belongs to the universal ribosomal protein uS3 family. (266 aa)
	PMAA_024690	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (162 aa)
	PMAA_024100	Uncharacterized protein. (542 aa)
	PMAA_023770	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (201 aa)
	rps0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (290 aa)

Your Current Organism:

Talaromyces marneffei

NCBI taxonomy Id: 441960
Other names: Penicillium marneffei ATCC 18224, T. marneffei ATCC 18224, Talaromyces marneffei ATCC 18224

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PMAA_002720	PMAA_003040	B6QSU5	B6QSX8	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.999
PMAA_002720	PMAA_003310	B6QSU5	B6QTC6	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	40S ribosomal protein S27.	0.999
PMAA_002720	PMAA_008870	B6QSU5	B6QUD8	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	40S ribosomal protein S10a.	0.999
PMAA_002720	PMAA_009840	B6QSU5	B6QUR3	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	Ribosomal protein S28e.	0.999
PMAA_002720	PMAA_016360	B6QSU5	B6Q7V3	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.999
PMAA_002720	PMAA_023770	B6QSU5	B6Q5U2	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
PMAA_002720	PMAA_024100	B6QSU5	B6Q643	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	Uncharacterized protein.	0.987
PMAA_002720	PMAA_024690	B6QSU5	B6Q6H2	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.987
PMAA_002720	PMAA_024830	B6QSU5	B6Q6J4	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	40S ribosomal protein S3, putative; Belongs to the universal ribosomal protein uS3 family.	0.999
PMAA_002720	PMAA_025340	B6QSU5	B6Q6Y9	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	Ribosomal protein S23 (S12); Belongs to the universal ribosomal protein uS12 family.	0.999
PMAA_002720	PMAA_026340	B6QSU5	B6Q822	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
PMAA_002720	PMAA_040590	B6QSU5	B6QQ60	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	Uncharacterized protein.	0.989
PMAA_002720	PMAA_047150	B6QSU5	B6QNY0	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	40S ribosomal protein S21; Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability.	0.822
PMAA_002720	PMAA_047690	B6QSU5	B6QP96	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	40S ribosomal protein Rps16, putative; Belongs to the universal ribosomal protein uS9 family.	0.999
PMAA_002720	PMAA_047730	B6QSU5	B6QPA0	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.	0.999
PMAA_002720	PMAA_052280	B6QSU5	B6QND2	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	0.999
PMAA_002720	PMAA_054600	B6QSU5	B6QKN7	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.989
PMAA_002720	PMAA_055530	B6QSU5	B6QKY0	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	40S ribosomal protein S19.	0.999
PMAA_002720	PMAA_057510	B6QSU5	B6QLJ0	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	Uncharacterized protein.	0.990
PMAA_002720	PMAA_057590	B6QSU5	B6QLJ9	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.990