37 items (Talaromyces marneffei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PMAA_030250	Uncharacterized protein. (60 aa)
	PMAA_056480	60S ribosomal protein L25, putative. (254 aa)
	PMAA_054680	50S ribosomal protein YmL27. (162 aa)
	PMAA_097540	50S ribosomal subunit protein L15. (317 aa)
	PMAA_094660	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (116 aa)
	PMAA_093620	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (342 aa)
	PMAA_092840	Urease accessory protein UreG, putative. (275 aa)
	PMAA_092330	Mitochondrial large ribosomal subunit protein L16, putative; Belongs to the universal ribosomal protein uL16 family. (224 aa)
	PMAA_083250	RNase III domain protein. (259 aa)
	PMAA_083200	Mitochondrial ribosomal protein, putative. (219 aa)
	PMAA_082680	Mitochondrial large ribosomal subunit protein L1, putative. (304 aa)
	PMAA_078210	50S ribosomal protein Mrp49. (207 aa)
	PMAA_068210	60S ribosomal protein L3. (404 aa)
	PMAA_070870	50S ribosomal protein L14; Belongs to the universal ribosomal protein uL14 family. (131 aa)
	PMAA_026690	KOW motif domain protein. (353 aa)
	PMAA_025310	50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family. (202 aa)
	PMAA_034400	50S ribosomal subunit L30. (347 aa)
	PMAA_034060	Uncharacterized protein. (376 aa)
	PMAA_033910	Mitochondrial ribosomal protein L43, putative. (137 aa)
	PMAA_033660	50S ribosomal protein L4. (298 aa)
	PMAA_033650	Mitochondrial large ribosomal subunit YmL35, putative. (418 aa)
	PMAA_031000	Mitochondrial ribosomal protein L23, putative. (234 aa)
	PMAA_030910	Mitochondrial ribosomal protein L11, putative; Belongs to the universal ribosomal protein uL11 family. (153 aa)
	PMAA_042140	50S ribosomal protein L2. (409 aa)
	PMAA_040690	50S ribosomal protein L24. (237 aa)
	PMAA_039990	50S ribosomal protein L36, putative. (189 aa)
	PMAA_040440	50S ribosomal protein L30, putative. (98 aa)
	PMAA_048360	50S ribosomal protein L4. (246 aa)
	PMAA_047680	50S ribosomal protein L13. (175 aa)
	PMAA_036980	50S ribosomal subunit L7, putative. (351 aa)
	PMAA_028180	50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (300 aa)
	PMAA_019250	Mitochondrial large ribosomal subunit L49, putative. (194 aa)
	PMAA_020470	Uncharacterized protein. (175 aa)
	PMAA_030030	60S ribosomal protein L6, putative; Belongs to the universal ribosomal protein uL6 family. (253 aa)
	PMAA_013680	Aconitate hydratase, putative. (275 aa)
	PMAA_013310	Uncharacterized protein. (154 aa)
	PMAA_043640	Uncharacterized protein. (635 aa)

Your Current Organism:

Talaromyces marneffei

NCBI taxonomy Id: 441960
Other names: Penicillium marneffei ATCC 18224, T. marneffei ATCC 18224, Talaromyces marneffei ATCC 18224

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PMAA_013310	PMAA_013680	B6QVR2	B6QVY2	Uncharacterized protein.	Aconitate hydratase, putative.	0.607
PMAA_013310	PMAA_019250	B6QVR2	B6Q338	Uncharacterized protein.	Mitochondrial large ribosomal subunit L49, putative.	0.571
PMAA_013310	PMAA_020470	B6QVR2	B6Q3W3	Uncharacterized protein.	Uncharacterized protein.	0.620
PMAA_013310	PMAA_025310	B6QVR2	B6Q6Y6	Uncharacterized protein.	50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.516
PMAA_013310	PMAA_026690	B6QVR2	B6Q859	Uncharacterized protein.	KOW motif domain protein.	0.495
PMAA_013310	PMAA_028180	B6QVR2	B6Q2N7	Uncharacterized protein.	50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.786
PMAA_013310	PMAA_030030	B6QVR2	B6Q413	Uncharacterized protein.	60S ribosomal protein L6, putative; Belongs to the universal ribosomal protein uL6 family.	0.542
PMAA_013310	PMAA_030250	B6QVR2	B6Q436	Uncharacterized protein.	Uncharacterized protein.	0.701
PMAA_013310	PMAA_030910	B6QVR2	B6Q4G9	Uncharacterized protein.	Mitochondrial ribosomal protein L11, putative; Belongs to the universal ribosomal protein uL11 family.	0.560
PMAA_013310	PMAA_031000	B6QVR2	B6Q4H8	Uncharacterized protein.	Mitochondrial ribosomal protein L23, putative.	0.594
PMAA_013310	PMAA_033650	B6QVR2	B6Q686	Uncharacterized protein.	Mitochondrial large ribosomal subunit YmL35, putative.	0.567
PMAA_013310	PMAA_033660	B6QVR2	B6Q687	Uncharacterized protein.	50S ribosomal protein L4.	0.498
PMAA_013310	PMAA_033910	B6QVR2	B6Q6B3	Uncharacterized protein.	Mitochondrial ribosomal protein L43, putative.	0.676
PMAA_013310	PMAA_034060	B6QVR2	B6Q6C8	Uncharacterized protein.	Uncharacterized protein.	0.495
PMAA_013310	PMAA_034400	B6QVR2	B6Q6N4	Uncharacterized protein.	50S ribosomal subunit L30.	0.642
PMAA_013310	PMAA_036980	B6QVR2	B6Q1Q6	Uncharacterized protein.	50S ribosomal subunit L7, putative.	0.542
PMAA_013310	PMAA_039990	B6QVR2	B6QQ16	Uncharacterized protein.	50S ribosomal protein L36, putative.	0.585
PMAA_013310	PMAA_040440	B6QVR2	B6QPY1	Uncharacterized protein.	50S ribosomal protein L30, putative.	0.611
PMAA_013310	PMAA_040690	B6QVR2	B6QQ70	Uncharacterized protein.	50S ribosomal protein L24.	0.592
PMAA_013310	PMAA_042140	B6QVR2	B6QQR3	Uncharacterized protein.	50S ribosomal protein L2.	0.495