11 items (Talaromyces marneffei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PMAA_015660	Onanonoxo-7-onima-8-eninoihtemlysoneda. (796 aa)
	PMAA_063220	Glutamate-1-semialdehyde 2,1-aminomutase, putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (544 aa)
	PMAA_064320	Aminotransferase, putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (447 aa)
	PMAA_075440	Aminotransferase, class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (455 aa)
	PMAA_078690	Glutamate-1-semialdehyde 2,1-aminomutase, putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (459 aa)
	PMAA_089360	Aminotransferase, putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (479 aa)
	PMAA_084640	4-aminobutyrate transaminase GatA; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (494 aa)
	PMAA_092560	Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (478 aa)
	PMAA_055590	Glutamate-1-semialdehyde 2,1-aminomutase, putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (438 aa)
	PMAA_056310	Ornithine aminotransferase. (462 aa)
	PMAA_051530	Ornithine aminotransferase. (455 aa)

Your Current Organism:

Talaromyces marneffei

NCBI taxonomy Id: 441960
Other names: Penicillium marneffei ATCC 18224, T. marneffei ATCC 18224, Talaromyces marneffei ATCC 18224

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PMAA_051530	PMAA_056310	B6QN02	B6QL62	Ornithine aminotransferase.	Ornithine aminotransferase.	0.904
PMAA_055590	PMAA_063220	B6QKY6	B6QA76	Glutamate-1-semialdehyde 2,1-aminomutase, putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Glutamate-1-semialdehyde 2,1-aminomutase, putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.906
PMAA_055590	PMAA_078690	B6QKY6	B6QDX1	Glutamate-1-semialdehyde 2,1-aminomutase, putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Glutamate-1-semialdehyde 2,1-aminomutase, putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.906
PMAA_056310	PMAA_051530	B6QL62	B6QN02	Ornithine aminotransferase.	Ornithine aminotransferase.	0.904
PMAA_063220	PMAA_055590	B6QA76	B6QKY6	Glutamate-1-semialdehyde 2,1-aminomutase, putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Glutamate-1-semialdehyde 2,1-aminomutase, putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.906
PMAA_063220	PMAA_078690	B6QA76	B6QDX1	Glutamate-1-semialdehyde 2,1-aminomutase, putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Glutamate-1-semialdehyde 2,1-aminomutase, putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.906
PMAA_078690	PMAA_055590	B6QDX1	B6QKY6	Glutamate-1-semialdehyde 2,1-aminomutase, putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Glutamate-1-semialdehyde 2,1-aminomutase, putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.906
PMAA_078690	PMAA_063220	B6QDX1	B6QA76	Glutamate-1-semialdehyde 2,1-aminomutase, putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Glutamate-1-semialdehyde 2,1-aminomutase, putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.906