33 items (Talaromyces marneffei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PMAA_085610	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. (940 aa)
	PMAA_084130	AP-2 adaptor complex subunit mu, putative; Belongs to the adaptor complexes medium subunit family. (440 aa)
	sho1	High osmolarity signaling protein sho1; Plasma membrane osmosensor that activates the high osmolarity glycerol (HOG) MAPK signaling pathway in response to high osmolarity. (282 aa)
	PMAA_078230	EH domain binding protein epsin 2. (555 aa)
	PMAA_075020	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (145 aa)
	PMAA_073680	Heat shock protein Hsp98/Hsp104/ClpA, putative; Belongs to the ClpA/ClpB family. (928 aa)
	PMAA_073340	Rad60-SLD_2 domain-containing protein. (279 aa)
	PMAA_063770	Ubiquitin-like protein DskB, putative. (454 aa)
	PMAA_070430	NEDD8-like protein (RubA), putative. (77 aa)
	PMAA_069700	COP9 subunit 3, putative. (497 aa)
	PMAA_034580	MFS domain-containing protein. (488 aa)
	PMAA_024510	Vacuolar sorting receptor (Mrl1), putative. (369 aa)
	PMAA_024280	Serine/threonine protein kinase, putative. (1011 aa)
	PMAA_024120	LMBR1 domain protein. (720 aa)
	PMAA_023510	Ubiquitin (UbiC), putative. (154 aa)
	PMAA_032680	Adaptin ear-binding coat-associated protein, putative. (278 aa)
	PMAA_030340	Vacuolar protein sorting-associated protein 27; Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane. (685 aa)
	PMAA_027450	BZIP domain-containing protein. (330 aa)
	PMAA_037090	COP9 signalosome subunit 6 (CsnF), putative. (398 aa)
	PMAA_012600	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. (762 aa)
	PMAA_003260	COP9 signalosome subunit 2 (CsnB), putative. (498 aa)
	PMAA_003880	MFS amine transporter, putative. (481 aa)
	PMAA_042900	Heat shock protein/chaperonin HSP78, putative; Belongs to the ClpA/ClpB family. (787 aa)
	PMAA_040180	COP9 signalosome subunit 7 (CsnG), putative. (342 aa)
	PMAA_047580	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. (718 aa)
	PMAA_047210	Golgi to endosome transport protein (Ent3), putative. (538 aa)
	PMAA_052800	Synaptobrevin-like protein Sybl1, putative; Belongs to the synaptobrevin family. (258 aa)
	PMAA_061100	MFS transporter, putative. (455 aa)
	PMAA_059800	COP9 signalosome subunit 8 (CsnH), putative. (213 aa)
	PMAA_057570	ENTH domain protein. (612 aa)
	PMAA_056060	Polarized growth protein (Boi2), putative. (1001 aa)
	PMAA_092980	Uncharacterized protein. (379 aa)
	PMAA_092910	SNARE protein Snc2, putative. (133 aa)

Your Current Organism:

Talaromyces marneffei

NCBI taxonomy Id: 441960
Other names: Penicillium marneffei ATCC 18224, T. marneffei ATCC 18224, Talaromyces marneffei ATCC 18224

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PMAA_003260	PMAA_023510	B6QTC1	B6Q5R5	COP9 signalosome subunit 2 (CsnB), putative.	Ubiquitin (UbiC), putative.	0.645
PMAA_003260	PMAA_027450	B6QTC1	B6Q224	COP9 signalosome subunit 2 (CsnB), putative.	BZIP domain-containing protein.	0.645
PMAA_003260	PMAA_037090	B6QTC1	B6Q1R8	COP9 signalosome subunit 2 (CsnB), putative.	COP9 signalosome subunit 6 (CsnF), putative.	0.999
PMAA_003260	PMAA_040180	B6QTC1	B6QQ43	COP9 signalosome subunit 2 (CsnB), putative.	COP9 signalosome subunit 7 (CsnG), putative.	0.993
PMAA_003260	PMAA_056060	B6QTC1	B6QL37	COP9 signalosome subunit 2 (CsnB), putative.	Polarized growth protein (Boi2), putative.	0.415
PMAA_003260	PMAA_059800	B6QTC1	B6QM74	COP9 signalosome subunit 2 (CsnB), putative.	COP9 signalosome subunit 8 (CsnH), putative.	0.999
PMAA_003260	PMAA_063770	B6QTC1	B6QAD3	COP9 signalosome subunit 2 (CsnB), putative.	Ubiquitin-like protein DskB, putative.	0.415
PMAA_003260	PMAA_069700	B6QTC1	B6Q8S2	COP9 signalosome subunit 2 (CsnB), putative.	COP9 subunit 3, putative.	0.999
PMAA_003260	PMAA_070430	B6QTC1	B6Q901	COP9 signalosome subunit 2 (CsnB), putative.	NEDD8-like protein (RubA), putative.	0.883
PMAA_003880	PMAA_057570	B6QT24	B6QLJ7	MFS amine transporter, putative.	ENTH domain protein.	0.575
PMAA_003880	PMAA_092910	B6QT24	B6QH15	MFS amine transporter, putative.	SNARE protein Snc2, putative.	0.623
PMAA_012600	PMAA_024280	B6QVI6	B6Q662	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	Serine/threonine protein kinase, putative.	0.582
PMAA_012600	PMAA_030340	B6QVI6	B6Q445	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	Vacuolar protein sorting-associated protein 27; Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane.	0.593
PMAA_012600	PMAA_032680	B6QVI6	B6Q5K6	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	Adaptin ear-binding coat-associated protein, putative.	0.757
PMAA_012600	PMAA_047210	B6QVI6	B6QNY6	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	Golgi to endosome transport protein (Ent3), putative.	0.508
PMAA_012600	PMAA_057570	B6QVI6	B6QLJ7	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	ENTH domain protein.	0.624
PMAA_012600	PMAA_075020	B6QVI6	B6QBC4	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.909
PMAA_012600	PMAA_078230	B6QVI6	B6QDK8	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	EH domain binding protein epsin 2.	0.674
PMAA_012600	PMAA_084130	B6QVI6	B6QG22	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	AP-2 adaptor complex subunit mu, putative; Belongs to the adaptor complexes medium subunit family.	0.936
PMAA_012600	PMAA_085610	B6QVI6	B6QGI1	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.759