15 items (Talaromyces marneffei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PMAA_017200	Glutamate carboxypeptidase Tre2, putative. (895 aa)
	PMAA_027410	Asparagine synthetase Asn2, putative. (575 aa)
	PMAA_018350	Aspartate transaminase, putative. (431 aa)
	PMAA_025520	Acetyltransferase, GNAT family. (174 aa)
	PMAA_073890	Uncharacterized protein. (186 aa)
	PMAA_087360	Aspartate aminotransferase. (466 aa)
	PMAA_080660	N-acetyltransferase, GNAT family, putative. (182 aa)
	PMAA_080770	Lysophospholipase, putative. (560 aa)
	PMAA_096200	Uncharacterized protein. (445 aa)
	PMAA_098600	GNAT family acetyltransferase, putative. (210 aa)
	PMAA_100590	Aspartate aminotransferase. (391 aa)
	PMAA_055210	Glutamate carboxypeptidase, putative. (777 aa)
	PMAA_050840	GNAT family N-acetyltransferase, putative. (182 aa)
	PMAA_052210	Mitochondrial carrier protein, putative; Belongs to the mitochondrial carrier (TC 2.A.29) family. (694 aa)
	PMAA_040380	Aspartate aminotransferase. (429 aa)

Your Current Organism:

Talaromyces marneffei

NCBI taxonomy Id: 441960
Other names: Penicillium marneffei ATCC 18224, T. marneffei ATCC 18224, Talaromyces marneffei ATCC 18224

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PMAA_018350	PMAA_027410	B6Q2G9	B6Q220	Aspartate transaminase, putative.	Asparagine synthetase Asn2, putative.	0.936
PMAA_018350	PMAA_040380	B6Q2G9	B6QPX5	Aspartate transaminase, putative.	Aspartate aminotransferase.	0.962
PMAA_018350	PMAA_087360	B6Q2G9	B6QDD0	Aspartate transaminase, putative.	Aspartate aminotransferase.	0.904
PMAA_018350	PMAA_100590	B6Q2G9	B6QJJ7	Aspartate transaminase, putative.	Aspartate aminotransferase.	0.906
PMAA_027410	PMAA_018350	B6Q220	B6Q2G9	Asparagine synthetase Asn2, putative.	Aspartate transaminase, putative.	0.936
PMAA_027410	PMAA_040380	B6Q220	B6QPX5	Asparagine synthetase Asn2, putative.	Aspartate aminotransferase.	0.961
PMAA_027410	PMAA_080770	B6Q220	B6QF27	Asparagine synthetase Asn2, putative.	Lysophospholipase, putative.	0.447
PMAA_027410	PMAA_087360	B6Q220	B6QDD0	Asparagine synthetase Asn2, putative.	Aspartate aminotransferase.	0.936
PMAA_027410	PMAA_096200	B6Q220	B6QI24	Asparagine synthetase Asn2, putative.	Uncharacterized protein.	0.447
PMAA_027410	PMAA_100590	B6Q220	B6QJJ7	Asparagine synthetase Asn2, putative.	Aspartate aminotransferase.	0.936
PMAA_040380	PMAA_018350	B6QPX5	B6Q2G9	Aspartate aminotransferase.	Aspartate transaminase, putative.	0.962
PMAA_040380	PMAA_027410	B6QPX5	B6Q220	Aspartate aminotransferase.	Asparagine synthetase Asn2, putative.	0.961
PMAA_040380	PMAA_087360	B6QPX5	B6QDD0	Aspartate aminotransferase.	Aspartate aminotransferase.	0.961
PMAA_040380	PMAA_100590	B6QPX5	B6QJJ7	Aspartate aminotransferase.	Aspartate aminotransferase.	0.953
PMAA_080770	PMAA_027410	B6QF27	B6Q220	Lysophospholipase, putative.	Asparagine synthetase Asn2, putative.	0.447
PMAA_087360	PMAA_018350	B6QDD0	B6Q2G9	Aspartate aminotransferase.	Aspartate transaminase, putative.	0.904
PMAA_087360	PMAA_027410	B6QDD0	B6Q220	Aspartate aminotransferase.	Asparagine synthetase Asn2, putative.	0.936
PMAA_087360	PMAA_040380	B6QDD0	B6QPX5	Aspartate aminotransferase.	Aspartate aminotransferase.	0.961
PMAA_087360	PMAA_100590	B6QDD0	B6QJJ7	Aspartate aminotransferase.	Aspartate aminotransferase.	0.904
PMAA_096200	PMAA_027410	B6QI24	B6Q220	Uncharacterized protein.	Asparagine synthetase Asn2, putative.	0.447