STRINGSTRING
DJ90_835 DJ90_835 DJ90_1028 DJ90_1028 DJ90_1398 DJ90_1398 DJ90_1553 DJ90_1553 DJ90_1684 DJ90_1684 DJ90_1715 DJ90_1715 DJ90_1716 DJ90_1716 DJ90_2012 DJ90_2012 DJ90_2013 DJ90_2013 DJ90_2020 DJ90_2020 DJ90_2049 DJ90_2049 yajC yajC secD secD secF secF DJ90_2743 DJ90_2743 DJ90_2923 DJ90_2923 DJ90_3595 DJ90_3595 secA secA DJ90_4370 DJ90_4370 DJ90_4415 DJ90_4415 tatC tatC tatA tatA secG secG yidC yidC clpC clpC secE secE secY secY DJ90_6185 DJ90_6185 DJ90_6220 DJ90_6220 ftsY ftsY ffh ffh DJ90_6432 DJ90_6432 DJ90_6434 DJ90_6434 DJ90_6589 DJ90_6589 DJ90_666 DJ90_666 DJ90_820 DJ90_820 DJ90_821 DJ90_821 DJ90_831 DJ90_831 DJ90_4836 DJ90_4836 DJ90_925 DJ90_925 DJ90_842 DJ90_842
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
DJ90_835Phage late control D family protein. (1026 aa)
DJ90_1028Hypothetical protein. (108 aa)
DJ90_1398nlpC/P60 family protein. (769 aa)
DJ90_1553Hypothetical protein. (52 aa)
DJ90_1684Type IV secretory system Conjugative DNA transfer family protein. (589 aa)
DJ90_1715Putative SEC-C motif domain protein. (122 aa)
DJ90_1716Putative sEC-C motif protein. (225 aa)
DJ90_2012Hypothetical protein. (167 aa)
DJ90_2013Type IV secretory system Conjugative DNA transfer family protein. (528 aa)
DJ90_2020Type IV leader peptidase family protein. (145 aa)
DJ90_2049Hypothetical protein. (499 aa)
yajCyajC: preprotein translocase, YajC subunit. (107 aa)
secDExport membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. (417 aa)
secFExport membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. (297 aa)
DJ90_2743Phage late control D family protein. (500 aa)
DJ90_2923Type IV leader peptidase family protein. (142 aa)
DJ90_3595Stage II sporulation E family protein. (257 aa)
secAPreprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. (835 aa)
DJ90_4370Transglycosylase SLT domain protein. (187 aa)
DJ90_4415Type IV leader peptidase family protein. (168 aa)
tatCTwin arginine-targeting protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. (252 aa)
tatAmttA/Hcf106 family protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. (72 aa)
secGPreprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. (77 aa)
yidCyidC_oxa1_cterm: membrane insertase, YidC/Oxa1 family domain protein. (295 aa)
clpCNegative regulator of genetic competence ClpC/MecB; Belongs to the ClpA/ClpB family. (813 aa)
secEPreprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. (63 aa)
secYPreprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. (432 aa)
DJ90_6185Septum formation initiator family protein. (119 aa)
DJ90_6220Outer membrane efflux family protein. (506 aa)
ftsYSignal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). (331 aa)
ffhSignal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. (458 aa)
DJ90_6432Type IV leader peptidase family protein. (201 aa)
DJ90_6434Type II/IV secretion system family protein. (546 aa)
DJ90_6589Acetyltransferase family protein. (461 aa)
DJ90_666Transglycosylase SLT domain protein. (244 aa)
DJ90_820Phosphatase 2C family protein. (300 aa)
DJ90_821Stage II sporulation E family protein. (718 aa)
DJ90_831Phage late control D family protein. (521 aa)
DJ90_4836SEC-C motif family protein. (401 aa)
DJ90_925Outer membrane efflux family protein. (377 aa)
DJ90_842Phage late control D family protein. (1055 aa)
Your Current Organism:
Paenibacillus macerans
NCBI taxonomy Id: 44252
Other names: ATCC 8244, Aerobacillus macerans, BCRC 14680, Bacillus macerans, Bactrillum macerans, CCM 2012, CCRC 14680, CCRC:14680, CCUG 7423, CFBP 4253, CIP 66.19, DSM 24, HAMBI 636, IAM 12467, IFO 15307, JCM 2500, LMG 13281, LMG 6324, LMG:13281, LMG:6324, NBRC 15307, NCCB 48019, NCIB 9368, NCIMB 9368, NCTC 6355, NRRL B-172, NRRL B-394, NRRL B-4267, P. macerans, VKM B-506, Zymobacillus macerans
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