STRINGSTRING
GM21_0041 GM21_0041 GM21_0042 GM21_0042 GM21_0043 GM21_0043 GM21_0044 GM21_0044 GM21_0045 GM21_0045 GM21_0046 GM21_0046 GM21_0047 GM21_0047 GM21_0097 GM21_0097 GM21_0101 GM21_0101 GM21_0102 GM21_0102 GM21_0103 GM21_0103 GM21_0104 GM21_0104 GM21_0105 GM21_0105 GM21_0106 GM21_0106 GM21_0304 GM21_0304 GM21_0305 GM21_0305 GM21_0672 GM21_0672 GM21_0673 GM21_0673 GM21_0725 GM21_0725 GM21_0910 GM21_0910 GM21_1955 GM21_1955 GM21_1956 GM21_1956 GM21_1957 GM21_1957 GM21_2236 GM21_2236 GM21_2638 GM21_2638 GM21_2639 GM21_2639 GM21_2640 GM21_2640 GM21_2641 GM21_2641 GM21_2733 GM21_2733 GM21_2849 GM21_2849 GM21_2850 GM21_2850 GM21_2851 GM21_2851 GM21_3033 GM21_3033 GM21_3034 GM21_3034 GM21_3040 GM21_3040 GM21_3041 GM21_3041 GM21_3043 GM21_3043 GM21_3044 GM21_3044 GM21_3045 GM21_3045 GM21_3052 GM21_3052 GM21_3986 GM21_3986
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GM21_0041KEGG: gbm:Gbem_0042 hypothetical protein. (276 aa)
GM21_0042KEGG: gbm:Gbem_0043 cytochrome c oxidase, subunit I; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family. (542 aa)
GM21_0043PFAM: cytochrome c oxidase subunit III; KEGG: gbm:Gbem_0044 cytochrome c oxidase subunit III. (199 aa)
GM21_0044TIGRFAM: caa(3)-type oxidase, subunit IV; KEGG: gbm:Gbem_0045 caa(3)-type oxidase, subunit IV. (95 aa)
GM21_0045Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). (300 aa)
GM21_0046UbiA prenyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. (272 aa)
GM21_0047KEGG: gbm:Gbem_0048 hypothetical protein. (64 aa)
GM21_0097KEGG: gbm:Gbem_0116 hypothetical protein. (166 aa)
GM21_0101PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: gbm:Gbem_0120 cytochrome c oxidase mono-heme subunit/FixO. (329 aa)
GM21_0102PFAM: cytochrome c oxidase subunit I; KEGG: gbm:Gbem_0121 cytochrome c oxidase subunit I. (463 aa)
GM21_0103KEGG: gbm:Gbem_0122 hypothetical protein. (183 aa)
GM21_0104KEGG: gbm:Gbem_0123 hypothetical protein. (358 aa)
GM21_0105PFAM: Polysulphide reductase NrfD; KEGG: gbm:Gbem_0124 polysulphide reductase NrfD. (624 aa)
GM21_0106PFAM: molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: gbm:Gbem_0125 molybdopterin oxidoreductase Fe4s4 region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (966 aa)
GM21_0304KEGG: gbm:Gbem_0312 aldehyde ferredoxin oxidoreductase; PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase. (600 aa)
GM21_0305KEGG: gbm:Gbem_0313 Fe-S-cluster-containing hydrogenase components 2-like protein. (241 aa)
GM21_0672PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: gbm:Gbem_0659 FAD-dependent pyridine nucleotide-disulphide oxidoreductase. (670 aa)
GM21_0673PFAM: molybdopterin oxidoreductase; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: gbm:Gbem_0660 molybdopterin oxidoreductase. (822 aa)
GM21_0725PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: gbm:Gbem_0713 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (668 aa)
GM21_0910PFAM: cytochrome c class I; KEGG: gbm:Gbem_3336 cytochrome c class I. (117 aa)
GM21_1955Contains selenocysteine; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: gur:Gura_3388 formate dehydrogenase, alpha subunit. (1009 aa)
GM21_1956PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_2266 4Fe-4S ferredoxin iron-sulfur binding domain protein. (278 aa)
GM21_1957PFAM: Polysulphide reductase NrfD; KEGG: gbm:Gbem_2265 polysulphide reductase NrfD. (403 aa)
GM21_2236PFAM: Polysulphide reductase NrfD; KEGG: gbm:Gbem_1984 polysulphide reductase, NrfD. (414 aa)
GM21_2638Contains selenocysteine; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: gur:Gura_3374 formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (1059 aa)
GM21_2639PFAM: Formate dehydrogenase transmembrane domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_1574 formate dehydrogenase transmembrane domain protein. (263 aa)
GM21_2640TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: gbm:Gbem_1573 formate dehydrogenase, gamma subunit. (204 aa)
GM21_2641Formate dehydrogenase accessory protein; Necessary for formate dehydrogenase activity. Belongs to the FdhE family. (280 aa)
GM21_2733KEGG: rpt:Rpal_1103 putative cytochrome c class I protein. (170 aa)
GM21_2849KEGG: geo:Geob_0121 hypothetical protein. (124 aa)
GM21_2850PFAM: cytochrome c class I; KEGG: geo:Geob_0122 cytochrome c class I. (312 aa)
GM21_2851PFAM: Rieske [2Fe-2S] domain protein; KEGG: gme:Gmet_2121 twin-arginine translocation pathway signal. (167 aa)
GM21_3033KEGG: gbm:Gbem_1249 cytochrome c class I. (238 aa)
GM21_3034Nitric-oxide reductase; PFAM: cytochrome c oxidase subunit I; KEGG: gbm:Gbem_1248 cytochrome c oxidase subunit I. (457 aa)
GM21_3040PFAM: cytochrome c oxidase subunit I; KEGG: gbm:Gbem_1237 cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family. (467 aa)
GM21_3041TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: gbm:Gbem_1236 cytochrome c oxidase, cbb3-type, subunit II. (286 aa)
GM21_3043PFAM: cytochrome c class I; KEGG: gbm:Gbem_1234 cytochrome c class I. (163 aa)
GM21_3044PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_1233 4Fe-4S ferredoxin, iron-sulfur binding protein. (407 aa)
GM21_3045PFAM: FixH family protein; KEGG: gbm:Gbem_1232 hypothetical protein. (152 aa)
GM21_3052PFAM: formylmethanofuran dehydrogenase subunit E region; KEGG: gbm:Gbem_1223 formylmethanofuran dehydrogenase subunit E-like protein. (185 aa)
GM21_3986KEGG: gbm:Gbem_3901 nitric oxide reductase. (762 aa)
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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