STRINGSTRING
GM21_2878 GM21_2878 GM21_2879 GM21_2879 cmoA cmoA cmoB cmoB GM21_2882 GM21_2882 GM21_3460 GM21_3460 GM21_3461 GM21_3461
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GM21_2878PFAM: protein of unknown function DUF1568; KEGG: gbm:Gbem_1406 protein of unknown function DUF1568. (289 aa)
GM21_2879KEGG: gbm:Gbem_1404 hypothetical protein. (287 aa)
cmoAMethyltransferase; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM). (244 aa)
cmoBMethyltransferase; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs. (323 aa)
GM21_2882KEGG: gbm:Gbem_1401 hypothetical protein. (244 aa)
GM21_3460PFAM: protein of unknown function DUF152; KEGG: gbm:Gbem_3397 protein of unknown function DUF152; Belongs to the multicopper oxidase YfiH/RL5 family. (264 aa)
GM21_3461KEGG: gbm:Gbem_3398 hypothetical protein. (342 aa)
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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