STRINGSTRING
GM21_1461 GM21_1461 GM21_1968 GM21_1968 GM21_2340 GM21_2340 GM21_2342 GM21_2342 GM21_2343 GM21_2343 GM21_2344 GM21_2344 GM21_2345 GM21_2345 GM21_2346 GM21_2346 GM21_2347 GM21_2347 GM21_2348 GM21_2348 GM21_2349 GM21_2349 GM21_2350 GM21_2350 GM21_2351 GM21_2351 GM21_2352 GM21_2352 GM21_2353 GM21_2353 GM21_2354 GM21_2354 GM21_2355 GM21_2355 GM21_2356 GM21_2356 GM21_3140 GM21_3140 GM21_3141 GM21_3141 GM21_3142 GM21_3142 GM21_3199 GM21_3199 GM21_3200 GM21_3200 GM21_3201 GM21_3201 GM21_3202 GM21_3202 GM21_3203 GM21_3203 GM21_3204 GM21_3204 GM21_3205 GM21_3205 GM21_3206 GM21_3206 GM21_3207 GM21_3207 GM21_3208 GM21_3208 GM21_3209 GM21_3209 GM21_3210 GM21_3210 GM21_3211 GM21_3211 GM21_3213 GM21_3213 GM21_3214 GM21_3214
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GM21_1461PFAM: domain of unknown function DUF1738; KEGG: ppr:PBPRB1631 antirestriction protein. (297 aa)
GM21_1968PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_2256 response regulator receiver protein. (146 aa)
GM21_2340KEGG: csa:Csal_1358 hypothetical protein. (175 aa)
GM21_2342Hypothetical protein. (95 aa)
GM21_2343PFAM: conjugation TrbI family protein; KEGG: mpo:Mpop_3095 conjugation TrbI family protein. (410 aa)
GM21_2344TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: pla:Plav_1842 P-type conjugative transfer protein TrbG. (348 aa)
GM21_2345PFAM: Conjugal transfer protein; KEGG: bpt:Bpet2213 conjugal transfer protein TrbF. (232 aa)
GM21_2346TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: gme:Gmet_A3573 type IV secretory pathway TrbL components-like. (391 aa)
GM21_2347TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: bpr:GBP346_A0974 P-type conjugative transfer protein TrbJ. (250 aa)
GM21_2348PFAM: CagE TrbE VirB component of type IV transporter system; KEGG: dac:Daci_0435 AAA ATPase. (810 aa)
GM21_2349PFAM: type IV secretory pathway VirB3 family protein; KEGG: dac:Daci_2697 putative conjugal transfer TrbD transmembrane protein. (84 aa)
GM21_2350PFAM: Conjugal transfer protein TrbC; KEGG: cak:Caul_5223 conjugal transfer protein TrbC. (104 aa)
GM21_2351TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; KEGG: xau:Xaut_2878 P-type conjugative transfer ATPase TrbB. (325 aa)
GM21_2352Sigma 54 interacting domain protein; KEGG: ajs:Ajs_4194 hypothetical protein. (672 aa)
GM21_2353KEGG: hypothetical protein. (117 aa)
GM21_2354TIGRFAM: conjugative relaxase domain protein; PFAM: TrwC relaxase; KEGG: bgl:bglu_4p0580 TrwC protein. (1351 aa)
GM21_2355PFAM: Lytic transglycosylase catalytic; KEGG: pna:Pnap_2494 lytic transglycosylase, catalytic. (203 aa)
GM21_2356KEGG: cak:Caul_5335 conjugal transfer protein TraF. (175 aa)
GM21_3140PFAM: protein of unknown function DUF309; KEGG: gbm:Gbem_1147 protein of unknown function DUF309. (130 aa)
GM21_3141KEGG: gbm:Gbem_1146 hypothetical protein. (383 aa)
GM21_3142PFAM: major facilitator superfamily MFS_1; KEGG: geo:Geob_2855 major facilitator superfamily MFS_1. (434 aa)
GM21_3199PFAM: von Willebrand factor type A; KEGG: gbm:Gbem_1062 von Willebrand factor type A. (368 aa)
GM21_3200PFAM: TadE family protein; KEGG: gbm:Gbem_1061 TadE family protein. (166 aa)
GM21_3201PFAM: TadE family protein; KEGG: gbm:Gbem_1060 TadE family protein. (148 aa)
GM21_3202KEGG: gbm:Gbem_1059 hypothetical protein. (64 aa)
GM21_3203TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: gbm:Gbem_1058 Flp pilus assembly protein CpaB. (291 aa)
GM21_3204PFAM: type II and III secretion system protein; transport-associated; KEGG: gbm:Gbem_1057 type II and III secretion system protein; Belongs to the bacterial secretin family. (451 aa)
GM21_3205KEGG: gbm:Gbem_1056 response regulator receiver protein. (373 aa)
GM21_3206PFAM: type II secretion system protein E; KEGG: gbm:Gbem_1055 type II secretion system protein E. (437 aa)
GM21_3207PFAM: type II secretion system protein; KEGG: gbm:Gbem_1054 type II secretion system protein. (320 aa)
GM21_3208PFAM: type II secretion system protein; KEGG: gbm:Gbem_1053 type II secretion system protein. (302 aa)
GM21_3209PFAM: protein of unknown function DUF192; KEGG: gbm:Gbem_1052 protein of unknown function DUF192. (113 aa)
GM21_3210KEGG: scl:sce4489 hypothetical protein. (488 aa)
GM21_3211KEGG: ppd:Ppro_2695 hypothetical protein. (514 aa)
GM21_3213PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_1049 glycosyl transferase family 2. (256 aa)
GM21_3214KEGG: gbm:Gbem_1047 hypothetical protein. (105 aa)
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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