STRINGSTRING
GM21_1295 GM21_1295 GM21_4129 GM21_4129 GM21_4124 GM21_4124 dksA dksA GM21_4069 GM21_4069 GM21_4061 GM21_4061 GM21_4055 GM21_4055 GM21_4024 GM21_4024 prfC prfC GM21_3981 GM21_3981 GM21_3963 GM21_3963 GM21_3903 GM21_3903 selA selA GM21_3878 GM21_3878 rsfS rsfS GM21_3848 GM21_3848 GM21_3841 GM21_3841 GM21_3828 GM21_3828 GM21_3809 GM21_3809 prfA prfA rpoD rpoD fur-3 fur-3 GM21_3720 GM21_3720 GM21_3697 GM21_3697 GM21_3628 GM21_3628 fur-2 fur-2 GM21_3594 GM21_3594 hrcA hrcA GM21_3567 GM21_3567 GM21_3531 GM21_3531 GM21_3514 GM21_3514 GM21_3475 GM21_3475 GM21_3468 GM21_3468 GM21_3466 GM21_3466 GM21_3460 GM21_3460 GM21_3458 GM21_3458 GM21_3426 GM21_3426 GM21_3390 GM21_3390 hpf hpf GM21_3387 GM21_3387 GM21_3361 GM21_3361 GM21_3343 GM21_3343 nusG nusG rplA rplA fusA-2 fusA-2 tuf tuf rny rny GM21_3286 GM21_3286 hfq hfq prfB prfB GM21_3225 GM21_3225 GM21_3223 GM21_3223 GM21_3198 GM21_3198 GM21_3133 GM21_3133 GM21_3122 GM21_3122 GM21_3105 GM21_3105 GM21_3098 GM21_3098 GM21_3065 GM21_3065 GM21_3044 GM21_3044 GM21_3015 GM21_3015 GM21_2987 GM21_2987 nusA nusA infB infB pnp pnp GM21_2969 GM21_2969 GM21_2954 GM21_2954 GM21_2942 GM21_2942 GM21_2939 GM21_2939 GM21_2891 GM21_2891 GM21_2879 GM21_2879 GM21_2873 GM21_2873 GM21_2869 GM21_2869 GM21_2855 GM21_2855 GM21_2838 GM21_2838 GM21_2828 GM21_2828 GM21_2816 GM21_2816 GM21_2814 GM21_2814 GM21_2725 GM21_2725 GM21_2694 GM21_2694 GM21_2686 GM21_2686 GM21_2682 GM21_2682 GM21_2670 GM21_2670 fur fur GM21_2621 GM21_2621 GM21_2584 GM21_2584 GM21_2553 GM21_2553 GM21_2550 GM21_2550 GM21_2529 GM21_2529 GM21_2518 GM21_2518 GM21_2513 GM21_2513 lexA lexA GM21_2448 GM21_2448 GM21_2443 GM21_2443 GM21_2425 GM21_2425 GM21_2417 GM21_2417 GM21_2405 GM21_2405 GM21_2391 GM21_2391 GM21_2372 GM21_2372 GM21_2339 GM21_2339 lepA lepA pyrR pyrR greA greA GM21_2298 GM21_2298 GM21_2293 GM21_2293 GM21_2232 GM21_2232 infC infC GM21_2224 GM21_2224 GM21_2223 GM21_2223 GM21_2218 GM21_2218 GM21_2215 GM21_2215 GM21_2214 GM21_2214 GM21_2196 GM21_2196 GM21_2179 GM21_2179 GM21_2178 GM21_2178 efp-2 efp-2 infA infA GM21_2156 GM21_2156 GM21_2087 GM21_2087 GM21_2062 GM21_2062 GM21_2051 GM21_2051 GM21_2010 GM21_2010 GM21_2005 GM21_2005 GM21_1986 GM21_1986 GM21_1975 GM21_1975 GM21_1971 GM21_1971 GM21_1954 GM21_1954 yacG yacG GM21_1942 GM21_1942 GM21_1905 GM21_1905 birA birA GM21_1872 GM21_1872 GM21_1869 GM21_1869 GM21_1866 GM21_1866 GM21_1859 GM21_1859 GM21_1827 GM21_1827 GM21_1826 GM21_1826 GM21_1823 GM21_1823 GM21_1810 GM21_1810 GM21_1806 GM21_1806 GM21_1805 GM21_1805 GM21_1797 GM21_1797 GM21_1776 GM21_1776 GM21_1749 GM21_1749 GM21_1735 GM21_1735 GM21_1698 GM21_1698 GM21_1635 GM21_1635 GM21_1607 GM21_1607 GM21_1585 GM21_1585 GM21_1584 GM21_1584 GM21_1577 GM21_1577 GM21_1557 GM21_1557 GM21_1536 GM21_1536 GM21_1502 GM21_1502 tsf tsf GM21_1484 GM21_1484 GM21_1458 GM21_1458 GM21_1441 GM21_1441 GM21_1425 GM21_1425 GM21_1405 GM21_1405 GM21_1371 GM21_1371 GM21_1369 GM21_1369 GM21_1356 GM21_1356 GM21_1337 GM21_1337 GM21_1321 GM21_1321 GM21_1306 GM21_1306 GM21_1303 GM21_1303 GM21_1292 GM21_1292 GM21_1289 GM21_1289 GM21_1281 GM21_1281 GM21_1275 GM21_1275 GM21_1271 GM21_1271 GM21_1256 GM21_1256 nusB nusB nrdR nrdR GM21_1210 GM21_1210 GM21_1191 GM21_1191 GM21_1173 GM21_1173 GM21_1147 GM21_1147 GM21_1135 GM21_1135 GM21_1119 GM21_1119 GM21_1118 GM21_1118 GM21_1104 GM21_1104 GM21_1103 GM21_1103 GM21_1077 GM21_1077 GM21_1038 GM21_1038 fusA fusA GM21_1016 GM21_1016 GM21_0996 GM21_0996 GM21_0978 GM21_0978 GM21_0962 GM21_0962 GM21_0951 GM21_0951 GM21_0945 GM21_0945 GM21_0933 GM21_0933 GM21_0928 GM21_0928 GM21_0846 GM21_0846 GM21_0841 GM21_0841 GM21_0833 GM21_0833 GM21_0823 GM21_0823 GM21_0765 GM21_0765 GM21_0760 GM21_0760 GM21_0758 GM21_0758 GM21_0754 GM21_0754 greB greB GM21_0722 GM21_0722 GM21_0701 GM21_0701 GM21_0688 GM21_0688 GM21_0686 GM21_0686 GM21_0684 GM21_0684 GM21_0682 GM21_0682 GM21_0669 GM21_0669 GM21_0658 GM21_0658 GM21_0637 GM21_0637 GM21_0631 GM21_0631 GM21_0630 GM21_0630 GM21_0586 GM21_0586 GM21_0527 GM21_0527 GM21_0522 GM21_0522 GM21_0518 GM21_0518 mraZ mraZ GM21_0483 GM21_0483 GM21_0467 GM21_0467 efp efp GM21_0413 GM21_0413 GM21_0396 GM21_0396 GM21_0359 GM21_0359 GM21_0355 GM21_0355 GM21_0341 GM21_0341 GM21_0312 GM21_0312 GM21_0288 GM21_0288 GM21_0287 GM21_0287 GM21_0268 GM21_0268 GM21_0227 GM21_0227 GM21_0205 GM21_0205 mfd mfd GM21_0191 GM21_0191 GM21_0164 GM21_0164 GM21_0133 GM21_0133 GM21_0130 GM21_0130 GM21_0082 GM21_0082 GM21_0034 GM21_0034
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
GM21_1295KEGG: gbm:Gbem_2930 PAS modulated sigma54 specific transcriptional regulator, fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold domain protein; PAS fold-4 domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; PAS domain containing protein. (457 aa)
GM21_4129Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: gbm:Gbem_4038 two component, sigma54 specific, transcriptional regulator, fis family. (468 aa)
GM21_4124Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: gbm:Gbem_4033 transcriptional regulator, LysR family. (308 aa)
dksATranscriptional regulator, TraR/DksA family; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. (118 aa)
GM21_4069Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: gur:Gura_3309 regulatory protein, ArsR. (115 aa)
GM21_4061PFAM: filamentation induced by cAMP protein Fic; KEGG: glo:Glov_2840 filamentation induced by cAMP protein Fic. (397 aa)
GM21_4055PFAM: amino acid-binding ACT domain protein; KEGG: gbm:Gbem_3969 amino acid-binding ACT domain protein. (188 aa)
GM21_4024Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: gbm:Gbem_3940 two component, sigma54 specific, transcriptional regulator, fis family. (467 aa)
prfCPeptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. (526 aa)
GM21_3981PFAM: regulatory protein TetR; KEGG: gbm:Gbem_3896 transcriptional regulator, TetR family. (198 aa)
GM21_3963PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_3875 4Fe-4S ferredoxin iron-sulfur binding domain protein. (528 aa)
GM21_3903Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: gbm:Gbem_3819 two component, sigma54 specific, transcriptional regulator, fis family. (455 aa)
selAL-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. (468 aa)
GM21_3878Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: gbm:Gbem_3795 transcriptional regulator, GntR family. (229 aa)
rsfSIojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. (128 aa)
GM21_3848TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: gbm:Gbem_3764 RNA polymerase, sigma 28 subunit, FliA/WhiG. (250 aa)
GM21_3841PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: gbm:Gbem_3757 negative regulator of flagellin synthesis. (100 aa)
GM21_3828PFAM: flagellar FlbT family protein; KEGG: gbm:Gbem_3744 flagellar FlbT family protein. (129 aa)
GM21_3809PFAM: Class I peptide chain release factor; KEGG: gbm:Gbem_3714 class I peptide chain release factor. (132 aa)
prfAPeptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. (359 aa)
rpoDRNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (584 aa)
fur-3Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: gbm:Gbem_3662 ferric uptake regulator, Fur family; Belongs to the Fur family. (151 aa)
GM21_3720KEGG: gbm:Gbem_3615 two component heavy metal response transcriptional regulator, winged helix family; TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver. (224 aa)
GM21_3697Hypothetical protein; KEGG: spc:Sputcn32_0166 putative integrase protein. (526 aa)
GM21_3628Transcriptional regulator NikR, CopG family; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family. (139 aa)
fur-2Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: gbm:Gbem_3535 ferric uptake regulator, Fur family; Belongs to the Fur family. (144 aa)
GM21_3594Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. (448 aa)
hrcAHeat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons. (343 aa)
GM21_3567Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: gme:Gmet_1895 MarR family transcriptional regulator. (143 aa)
GM21_3531Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: gbm:Gbem_3465 two component transcriptional regulator, winged helix family. (223 aa)
GM21_3514PFAM: regulatory protein MarR; KEGG: gbm:Gbem_3448 transcriptional regulator, MarR family. (203 aa)
GM21_3475Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: gbm:Gbem_3413 two component, sigma54 specific, transcriptional regulator, fis family. (453 aa)
GM21_3468Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: gbm:Gbem_3406 transcriptional regulator, Crp/Fnr family. (227 aa)
GM21_3466PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_3403 response regulator receiver protein. (125 aa)
GM21_3460PFAM: protein of unknown function DUF152; KEGG: gbm:Gbem_3397 protein of unknown function DUF152; Belongs to the multicopper oxidase YfiH/RL5 family. (264 aa)
GM21_3458KEGG: gbm:Gbem_3395 hypothetical protein. (87 aa)
GM21_3426PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gbm:Gbem_0834 ABC transporter related protein. (561 aa)
GM21_3390RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (515 aa)
hpfSigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (182 aa)
GM21_3387Conserved hypothetical protein; Displays ATPase and GTPase activities. (287 aa)
GM21_3361KEGG: gbm:Gbem_0900 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS domain containing protein. (756 aa)
GM21_3343TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; KEGG: gbm:Gbem_0918 translation elongation factor Tu. (396 aa)
nusGNusG antitermination factor; Participates in transcription elongation, termination and antitermination. (175 aa)
rplARibosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (233 aa)
fusA-2Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] (692 aa)
tufTranslation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (396 aa)
rnyRNA binding metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. (533 aa)
GM21_3286PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_0974 response regulator receiver protein. (162 aa)
hfqRNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. (74 aa)
prfBConserved hypothetical protein; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. (371 aa)
GM21_3225Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: gbm:Gbem_1036 transcriptional regulator, LysR family. (300 aa)
GM21_3223PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_1038 response regulator receiver protein. (131 aa)
GM21_3198Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: gbm:Gbem_1063 transcriptional regulator, Crp/Fnr family. (221 aa)
GM21_3133Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: ppd:Ppro_3272 MarR family transcriptional regulator. (153 aa)
GM21_3122Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: gbm:Gbem_1172 two component transcriptional regulator, winged helix family. (235 aa)
GM21_3105Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: gsu:GSU3229 LuxR family DNA-binding response regulator. (223 aa)
GM21_3098Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: gur:Gura_0925 two component, sigma-54 specific, fis family transcriptional regulator. (491 aa)
GM21_3065Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: gbm:Gbem_1208 transcriptional regulator, MarR family. (147 aa)
GM21_3044PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_1233 4Fe-4S ferredoxin, iron-sulfur binding protein. (407 aa)
GM21_3015TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: gbm:Gbem_1268 transcriptional regulator, BadM/Rrf2 family. (136 aa)
GM21_2987PFAM: helix-turn-helix Fis-type; response regulator receiver; KEGG: gbm:Gbem_1296 two component transcriptional regulator, fis family. (260 aa)
nusANusA antitermination factor; Participates in both transcription termination and antitermination. (382 aa)
infBTranslation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. (980 aa)
pnpPolyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (696 aa)
GM21_2969PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: gbm:Gbem_1314 GreA/GreB family elongation factor. (143 aa)
GM21_2954Transcriptional regulator, MerR family; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: gbm:Gbem_1329 transcriptional regulator, MerR family. (142 aa)
GM21_2942Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: gbm:Gbem_1342 two component transcriptional regulator, winged helix family. (234 aa)
GM21_2939Transcriptional regulator, ArsR family; PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; regulatory protein ArsR; Methyltransferase type 12; SMART: regulatory protein ArsR; KEGG: gbm:Gbem_1345 transcriptional regulator, ArsR family. (307 aa)
GM21_2891PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: gbm:Gbem_1391 cold-shock DNA-binding domain protein. (66 aa)
GM21_2879KEGG: gbm:Gbem_1404 hypothetical protein. (287 aa)
GM21_2873PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: gbm:Gbem_1407 transcriptional regulator, IclR family. (257 aa)
GM21_2869Transcriptional regulator, NifA subfamily, Fis Family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; PAS fold-4 domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; GAF domain protein; KEGG: gbm:Gbem_1411 transcriptional regulator, NifA subfamily, fis family. (648 aa)
GM21_2855Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; 4-vinyl reductase 4VR; Activator of aromatic catabolism; SMART: AAA ATPase; KEGG: gme:Gmet_2114 Fis family transcriptional regulator. (582 aa)
GM21_2838Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: gme:Gmet_2133 MarR family transcriptional regulator. (140 aa)
GM21_2828Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: gbm:Gbem_1426 two component, sigma54 specific, transcriptional regulator, fis family. (444 aa)
GM21_2816PAS modulated sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; SMART: AAA ATPase; PAS domain containing protein; KEGG: gbm:Gbem_1438 PAS modulated sigma54 specific transcriptional regulator, fis family. (591 aa)
GM21_2814TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: gbm:Gbem_1440 transcriptional regulator, BadM/Rrf2 family. (154 aa)
GM21_2725KEGG: gbm:Gbem_2991 hypothetical protein. (48 aa)
GM21_2694Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: gbm:Gbem_1522 two component, sigma54 specific, transcriptional regulator, fis family. (461 aa)
GM21_2686PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_1530 response regulator receiver protein. (410 aa)
GM21_2682Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: gbm:Gbem_1534 two component, sigma54 specific, transcriptional regulator, fis family. (456 aa)
GM21_2670Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: gbm:Gbem_1545 transcriptional regulator, XRE family. (65 aa)
furFerric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: gbm:Gbem_1587 ferric uptake regulator, Fur family; Belongs to the Fur family. (143 aa)
GM21_2621KEGG: gbm:Gbem_1592 sulfate transporter/antisigma-factor antagonist STAS. (120 aa)
GM21_2584Transcriptional regulator/antitoxin, MazE; PFAM: SpoVT/AbrB domain protein; KEGG: gur:Gura_1478 transcriptional regulator/antitoxin, MazE. (85 aa)
GM21_2553PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_1660 response regulator receiver protein. (126 aa)
GM21_2550PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_1663 response regulator receiver protein. (135 aa)
GM21_2529Transcriptional regulator, ModE family; TIGRFAM: molybdate transport repressor, ModE; PFAM: TOBE domain protein; regulatory protein LysR; KEGG: gbm:Gbem_1692 transcriptional regulator, ModE family. (263 aa)
GM21_2518Transcriptional regulator, AraC family; PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: gbm:Gbem_1704 transcriptional regulator, AraC family. (336 aa)
GM21_2513Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: gbm:Gbem_1846 two component transcriptional regulator, winged helix family. (225 aa)
lexASOS-response transcriptional repressor, LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (201 aa)
GM21_2448Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: gbm:Gbem_1802 transcriptional regulator, Crp/Fnr family. (238 aa)
GM21_2443KEGG: gbm:Gbem_1807 two component, sigma54 specific, transcriptional regulator, fis family; TIGRFAM: PEP-CTERM system response regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase. (454 aa)
GM21_2425KEGG: glo:Glov_0059 HicB family protein. (83 aa)
GM21_2417TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: glo:Glov_2586 putative addiction module antidote protein, CopG/Arc/MetJ family. (82 aa)
GM21_2405PFAM: ROSMUCR transcriptional regulator; KEGG: gbm:Gbem_2003 transcriptional regulator, MucR family. (177 aa)
GM21_2391RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (325 aa)
GM21_2372RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: glo:Glov_2342 hypothetical protein. (293 aa)
GM21_2339PFAM: Prophage CP4-57 regulatory; KEGG: ecm:EcSMS35_0941 transcriptional regulator, AlpA family. (73 aa)
lepAGTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. (599 aa)
pyrRUracil phosphoribosyltransferase; Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines. (177 aa)
greATranscription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. (158 aa)
GM21_2298Transcriptional regulator, XRE family; PFAM: protein of unknown function UPF0150; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: cti:RALTA_B2151 putative transcription regulator, cro/C1-type DNA-binding domain. (138 aa)
GM21_2293Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system. (83 aa)
GM21_2232Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: gbm:Gbem_1988 two component, sigma54 specific, transcriptional regulator, fis family. (509 aa)
infCTranslation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. (173 aa)
GM21_2224Histone family protein DNA-binding protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (92 aa)
GM21_2223Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: gbm:Gbem_1997 transcriptional regulator, MerR family. (112 aa)
GM21_2218PFAM: ROSMUCR transcriptional regulator; KEGG: gbm:Gbem_2003 transcriptional regulator, MucR family. (186 aa)
GM21_2215KEGG: gbm:Gbem_2007 hypothetical protein. (59 aa)
GM21_2214Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: gbm:Gbem_2008 transcriptional regulator, MerR family. (177 aa)
GM21_2196Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: gbm:Gbem_2023 two component, sigma54 specific, transcriptional regulator, fis family. (473 aa)
GM21_2179PFAM: Class I peptide chain release factor; KEGG: gbm:Gbem_2037 class I peptide chain release factor. (105 aa)
GM21_2178Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: gbm:Gbem_2038 transcriptional regulator, LysR family. (305 aa)
efp-2Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. (187 aa)
infATranslation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. (72 aa)
GM21_2156PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: gbm:Gbem_2060 histone family protein DNA-binding protein; Belongs to the bacterial histone-like protein family. (91 aa)
GM21_2087PFAM: fatty acid responsive transcription factor FadR domain protein; regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: gbm:Gbem_2130 regulatory protein GntR HTH. (233 aa)
GM21_2062Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: gbm:Gbem_2160 two component, sigma54 specific, transcriptional regulator, fis family. (449 aa)
GM21_2051PFAM: protein of unknown function DUF156; KEGG: gbm:Gbem_2171 protein of unknown function DUF156. (96 aa)
GM21_2010PFAM: ROSMUCR transcriptional regulator; KEGG: gbm:Gbem_2217 transcriptional regulator, MucR family. (173 aa)
GM21_2005PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: gbm:Gbem_2222 cold-shock DNA-binding domain protein. (66 aa)
GM21_1986Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: gbm:Gbem_2239 two component, sigma54 specific, transcriptional regulator, fis family. (457 aa)
GM21_1975PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_2249 response regulator receiver protein. (131 aa)
GM21_1971Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: gbm:Gbem_2253 two component transcriptional regulator, LuxR family. (216 aa)
GM21_1954Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: gbm:Gbem_2269 two component, sigma54 specific, transcriptional regulator, fis family. (455 aa)
yacGProtein of unknown function DUF329; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase. (62 aa)
GM21_1942PFAM: response regulator receiver; General secretory system II protein E domain protein; SMART: response regulator receiver; KEGG: gbm:Gbem_2281 response regulator receiver protein. (280 aa)
GM21_1905TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: gbm:Gbem_2318 translation elongation factor G. (701 aa)
birAbiotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family. (327 aa)
GM21_1872Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: gbm:Gbem_2350 transcriptional regulator, ArsR family. (112 aa)
GM21_1869Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: gsu:GSU3418 sigma-54 dependent DNA-binding response regulator. (469 aa)
GM21_1866Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: geo:Geob_1071 cyclic nucleotide-binding protein. (182 aa)
GM21_1859Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: gbm:Gbem_2359 transcriptional regulator, MarR family. (151 aa)
GM21_1827Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: gbm:Gbem_2392 two component, sigma54 specific, transcriptional regulator, fis family. (457 aa)
GM21_1826TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: gbm:Gbem_2393 metal dependent phosphohydrolase. (185 aa)
GM21_1823PFAM: zinc finger DksA/TraR C4-type; KEGG: gbm:Gbem_2396 transcriptional regulator, TraR/DksA family. (130 aa)
GM21_1810Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: gbm:Gbem_2408 two component, sigma54 specific, transcriptional regulator, fis family. (482 aa)
GM21_1806Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. (1004 aa)
GM21_1805KEGG: gbm:Gbem_2412 PAS modulated sigma54 specific transcriptional regulator, fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold domain protein; PAS fold-4 domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; PAS domain containing protein. (483 aa)
GM21_1797PFAM: response regulator receiver; General secretory system II protein E domain protein; SMART: response regulator receiver; KEGG: gbm:Gbem_2420 response regulator receiver protein. (292 aa)
GM21_1776Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: gbm:Gbem_2441 transcriptional regulator, ArsR family. (94 aa)
GM21_1749KEGG: gbm:Gbem_2468 putative anti-sigma regulatory factor, serine/threonine protein kinase. (147 aa)
GM21_1735TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: gbm:Gbem_2484 transcriptional regulator, BadM/Rrf2 family. (153 aa)
GM21_1698Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: gbm:Gbem_2521 two component, sigma54 specific, transcriptional regulator, fis family. (457 aa)
GM21_1635Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: gbm:Gbem_2591 two component, sigma54 specific, transcriptional regulator, fis family. (457 aa)
GM21_1607Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: gbm:Gbem_2628 transcriptional regulator, MarR family. (142 aa)
GM21_1585Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: gbm:Gbem_2649 anti-sigma-factor antagonist. (113 aa)
GM21_1584KEGG: gbm:Gbem_2650 putative anti-sigma regulatory factor, serine/threonine protein kinase. (141 aa)
GM21_1577Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: gbm:Gbem_2658 two component, sigma54 specific, transcriptional regulator, fis family. (458 aa)
GM21_1557RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (333 aa)
GM21_1536PFAM: ABC transporter related; SMC domain protein; SMART: AAA ATPase; KEGG: gbm:Gbem_2704 ABC transporter related protein. (540 aa)
GM21_1502PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: gbm:Gbem_2739 cold-shock DNA-binding domain protein. (68 aa)
tsfTranslation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. (216 aa)
GM21_1484Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: gbm:Gbem_2757 transcriptional regulator, LysR family. (307 aa)
GM21_1458Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: gur:Gura_0591 XRE family transcriptional regulator. (114 aa)
GM21_1441PFAM: Helix-turn-helix type 11 domain protein; KEGG: gbm:Gbem_2780 helix-turn-helix type 11 domain protein. (333 aa)
GM21_1425PFAM: protein of unknown function UPF0150; HicB family protein; KEGG: gur:Gura_0842 hypothetical protein. (135 aa)
GM21_1405Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: gbm:Gbem_2805 two component, sigma54 specific, transcriptional regulator, fis family. (478 aa)
GM21_1371PFAM: Transcriptional regulator IclR; KEGG: gbm:Gbem_2842 transcriptional regulator, IclR family. (255 aa)
GM21_1369Transcriptional regulator, MerR family; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: gbm:Gbem_2844 transcriptional regulator, MerR family. (134 aa)
GM21_1356PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: gbm:Gbem_2858 transcriptional regulator, AsnC family. (154 aa)
GM21_1337KEGG: gme:Gmet_A3570 CopG-like DNA-binding protein. (70 aa)
GM21_1321PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: gbm:Gbem_2904 GntR domain protein. (240 aa)
GM21_1306Transcriptional regulator, XRE family; PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: gbm:Gbem_2919 transcriptional regulator, XRE family. (170 aa)
GM21_1303Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: gbm:Gbem_2922 two component, sigma54 specific, transcriptional regulator, fis family. (471 aa)
GM21_1292Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gur:Gura_2014 PAS/PAC sensor signal transduction histidine kinase. (498 aa)
GM21_1289PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_2935 response regulator receiver protein. (125 aa)
GM21_1281PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: gbm:Gbem_2941 sulfate transporter/antisigma-factor antagonist STAS. (116 aa)
GM21_1275PFAM: protein of unknown function DUF1294; KEGG: gbm:Gbem_2948 protein of unknown function DUF1294. (120 aa)
GM21_1271Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: gbm:Gbem_2952 two component transcriptional regulator, winged helix family. (225 aa)
GM21_1256Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; KEGG: xcv:XCV2219 hypothetical protein. (64 aa)
nusBNusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. (145 aa)
nrdRATP-cone domain protein; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. (150 aa)
GM21_1210TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: gbm:Gbem_3040 type VI secretion system lysozyme-related protein. (145 aa)
GM21_1191KEGG: gbm:Gbem_3070 hypothetical protein. (207 aa)
GM21_1173PFAM: ROSMUCR transcriptional regulator; KEGG: gbm:Gbem_3088 transcriptional regulator, MucR family. (169 aa)
GM21_1147PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_3115 response regulator receiver protein. (131 aa)
GM21_1135PFAM: response regulator receiver; General secretory system II protein E domain protein; SMART: response regulator receiver; KEGG: gbm:Gbem_3127 response regulator receiver protein. (283 aa)
GM21_1119Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: gbm:Gbem_3142 two component, sigma54 specific, transcriptional regulator, fis family. (458 aa)
GM21_1118KEGG: gbm:Gbem_3143 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; SMART: PAS domain containing protein. (614 aa)
GM21_1104Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; KEGG: dat:HRM2_24220 TRAP-type C4-dicarboxylate transporter, periplasmic solute-binding protein. (215 aa)
GM21_1103Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: gsu:GSU1293 LuxR family DNA-binding response regulator. (216 aa)
GM21_1077PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: gbm:Gbem_3185 cold-shock DNA-binding domain protein. (66 aa)
GM21_1038Putative two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: gbm:Gbem_3227 two component, sigma54 specific, transcriptional regulator, fis family. (468 aa)
fusATranslation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] (703 aa)
GM21_1016Putative transcriptional regulator; PFAM: AAA-4 family protein; KEGG: bid:Bind_2313 putative transcriptional regulator. (396 aa)
GM21_0996PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: gbm:Gbem_3254 histone family protein DNA-binding protein; Belongs to the bacterial histone-like protein family. (93 aa)
GM21_0978KEGG: gbm:Gbem_3271 prevent-host-death family protein. (59 aa)
GM21_0962Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: gbm:Gbem_3286 two component, sigma54 specific, transcriptional regulator, fis family. (458 aa)
GM21_0951Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: gbm:Gbem_3296 two component transcriptional regulator, winged helix family. (223 aa)
GM21_0945PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gbm:Gbem_3303 ABC transporter related protein. (544 aa)
GM21_0933PFAM: protein of unknown function DUF28; KEGG: gbm:Gbem_3313 protein of unknown function DUF28. (247 aa)
GM21_0928PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gbm:Gbem_3318 ABC transporter related protein. (633 aa)
GM21_0846PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_0799 response regulator receiver protein. (225 aa)
GM21_0841Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: gbm:Gbem_0794 transcriptional regulator, GntR family. (231 aa)
GM21_0833PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: gbm:Gbem_0780 transcriptional regulator, AraC family. (302 aa)
GM21_0823PFAM: filamentation induced by cAMP protein Fic; KEGG: geo:Geob_0091 filamentation induced by cAMP protein Fic. (374 aa)
GM21_0765PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_0750 response regulator receiver protein. (125 aa)
GM21_0760PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_0745 response regulator receiver protein. (367 aa)
GM21_0758PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_0743 response regulator receiver protein. (132 aa)
GM21_0754PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_0739 response regulator receiver protein. (121 aa)
greBGreA/GreB family elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. (158 aa)
GM21_0722PFAM: response regulator receiver; type IV pilus assembly PilZ; SMART: response regulator receiver; KEGG: gbm:Gbem_0710 response regulator receiver modulated PilZ sensor protein. (240 aa)
GM21_0701PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gbm:Gbem_0690 ABC transporter related protein. (648 aa)
GM21_0688KEGG: gbm:Gbem_0675 response regulator receiver protein. (220 aa)
GM21_0686Putative two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: gbm:Gbem_0673 putative two component, sigma54 specific, transcriptional regulator, fis family. (466 aa)
GM21_0684Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: gbm:Gbem_0671 two component, sigma54 specific, transcriptional regulator, fis family. (469 aa)
GM21_0682PFAM: response regulator receiver; KEGG: gbm:Gbem_0669 response regulator receiver protein. (128 aa)
GM21_0669PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: gbm:Gbem_0656 transcriptional regulator, IclR family. (260 aa)
GM21_0658PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: gbm:Gbem_0645 cold-shock DNA-binding domain protein. (66 aa)
GM21_0637PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_0623 response regulator receiver protein. (121 aa)
GM21_0631PFAM: zinc finger DksA/TraR C4-type; KEGG: gbm:Gbem_0617 transcriptional regulator, TraR/DksA family. (139 aa)
GM21_0630PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_0616 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (331 aa)
GM21_0586RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (285 aa)
GM21_0527Transcriptional regulator, AraC family; PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: eca:ECA2247 AraC family transcription regulator. (318 aa)
GM21_0522Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: geo:Geob_0528 transcriptional regulator, ArsR family. (112 aa)
GM21_0518SOS-response transcriptional repressor, LexA; Represses a number of genes involved in the response to DNA damage (SOS response). (258 aa)
mraZPFAM: protein of unknown function UPF0040; KEGG: gbm:Gbem_0482 protein of unknown function UPF0040; Belongs to the MraZ family. (160 aa)
GM21_0483KEGG: gbm:Gbem_0466 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein. (147 aa)
GM21_0467Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: gbm:Gbem_0451 two component transcriptional regulator, LuxR family. (216 aa)
efpTranslation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. (187 aa)
GM21_0413TIGRFAM: translation initiation factor SUI1; PFAM: translation initiation factor SUI1; KEGG: gbm:Gbem_0413 translation initiation factor SUI1. (122 aa)
GM21_0396Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: gur:Gura_3625 two component, sigma-54 specific, fis family transcriptional regulator. (453 aa)
GM21_0359Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: geo:Geob_1285 transcriptional regulator, MarR family. (141 aa)
GM21_0355PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_0375 response regulator receiver protein. (132 aa)
GM21_0341TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: gbm:Gbem_0360 transcriptional regulator, BadM/Rrf2 family. (152 aa)
GM21_0312PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; SMART: GAF domain protein; AAA ATPase; KEGG: gbm:Gbem_0330 putative phytochrome sensor protein. (934 aa)
GM21_0288Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: gbm:Gbem_0307 transcriptional regulator, LysR family. (293 aa)
GM21_0287PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; KEGG: gbm:Gbem_0304 response regulator receiver protein. (494 aa)
GM21_0268Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: gbm:Gbem_0283 two component, sigma54 specific, transcriptional regulator, fis family. (456 aa)
GM21_0227Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: gbm:Gbem_0243 two component transcriptional regulator, winged helix family. (224 aa)
GM21_0205Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: gbm:Gbem_0222 transcriptional regulator, GntR family with aminotransferase domain. (463 aa)
mfdTranscription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1157 aa)
GM21_0191PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: gbm:Gbem_0208 cold-shock DNA-binding domain protein. (66 aa)
GM21_0164KEGG: gbm:Gbem_0182 GreA/GreB family elongation factor. (151 aa)
GM21_0133PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_0149 response regulator receiver protein. (149 aa)
GM21_0130PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_0147 response regulator receiver protein. (136 aa)
GM21_0082KEGG: gbm:Gbem_0100 hypothetical protein. (71 aa)
GM21_0034KEGG: gbm:Gbem_0035 selenocysteine-specific translation elongation factor; TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; Elongation factor SelB winged helix 3; Elongation factor SelB winged helix 2; elongation factor Tu domain 2 protein. (636 aa)
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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