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GM21_2914 GM21_2914 GM21_0269 GM21_0269 GM21_0305 GM21_0305 GM21_1123 GM21_1123 GM21_1124 GM21_1124 GM21_1572 GM21_1572 GM21_1955 GM21_1955 GM21_2638 GM21_2638 GM21_2848 GM21_2848 GM21_3173 GM21_3173
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GM21_2914KEGG: gbm:Gbem_1369 hydrogenase (NiFe) small subunit HydA; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit. (394 aa)
GM21_0269KEGG: gbm:Gbem_0284 hypothetical protein. (543 aa)
GM21_0305KEGG: gbm:Gbem_0313 Fe-S-cluster-containing hydrogenase components 2-like protein. (241 aa)
GM21_1123KEGG: gbm:Gbem_3139 hydrogenase (NiFe) small subunit HydA; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit. (368 aa)
GM21_1124PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_3138 4Fe-4S ferredoxin iron-sulfur binding domain protein. (309 aa)
GM21_1572PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: gbm:Gbem_2663 protein of unknown function DUF882. (189 aa)
GM21_1955Contains selenocysteine; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: gur:Gura_3388 formate dehydrogenase, alpha subunit. (1009 aa)
GM21_2638Contains selenocysteine; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: gur:Gura_3374 formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (1059 aa)
GM21_2848KEGG: geo:Geob_0120 twin-arginine translocation pathway signal. (139 aa)
GM21_3173PFAM: Rieske [2Fe-2S] domain protein; Cytochrome b6-f complex Fe-S subunit; KEGG: gsu:GSU1650 cytochrome b/b6 complex, iron-sulfur subunit. (139 aa)
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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