STRINGSTRING
GM21_0317 GM21_0317 GM21_0575 GM21_0575 GM21_0696 GM21_0696 accD accD GM21_1150 GM21_1150 accA accA GM21_1380 GM21_1380 GM21_2092 GM21_2092 GM21_2567 GM21_2567 GM21_2792 GM21_2792 GM21_2796 GM21_2796 GM21_2800 GM21_2800 GM21_2811 GM21_2811 GM21_2822 GM21_2822 GM21_2864 GM21_2864 GM21_2993 GM21_2993 clpP clpP GM21_3060 GM21_3060
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GM21_0317PFAM: carboxyl transferase; KEGG: gbm:Gbem_0335 carboxyl transferase. (514 aa)
GM21_0575Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: gbm:Gbem_0562 carboxyl transferase. (574 aa)
GM21_0696PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gbm:Gbem_0684 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (259 aa)
accDacetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (282 aa)
GM21_1150TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: gbm:Gbem_3112 signal peptide peptidase SppA, 36K type. (293 aa)
accAacetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (319 aa)
GM21_1380PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gbm:Gbem_2833 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (260 aa)
GM21_2092PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: gbm:Gbem_2126 3-hydroxyacyl-CoA dehydrogenase NAD-binding. (789 aa)
GM21_2567KEGG: gbm:Gbem_1646 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S41A family. (456 aa)
GM21_2792PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gbm:Gbem_1462 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (259 aa)
GM21_2796PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gbm:Gbem_1457 enoyl-CoA hydratase/isomerase. (287 aa)
GM21_2800PFAM: carboxyl transferase; KEGG: gbm:Gbem_1453 carboxyl transferase. (585 aa)
GM21_2811TIGRFAM: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gbm:Gbem_1443 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. (381 aa)
GM21_2822TIGRFAM: cyclohexa-1,5-dienecarbonyl-CoA hydratase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gbm:Gbem_1432 cyclohexa-1,5-dienecarbonyl-CoA hydratase. (269 aa)
GM21_2864PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gbm:Gbem_1416 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (260 aa)
GM21_2993KEGG: gbm:Gbem_1290 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; Belongs to the peptidase S41A family. (444 aa)
clpPATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. (199 aa)
GM21_3060PFAM: protein of unknown function DUF107; KEGG: gbm:Gbem_1213 protein of unknown function DUF107. (430 aa)
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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