(21 nodes) Cytochrome c-like domain superfamily network (Geobacter sp. M21)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GM21_3041	TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: gbm:Gbem_1236 cytochrome c oxidase, cbb3-type, subunit II. (286 aa)
	GM21_0910	PFAM: cytochrome c class I; KEGG: gbm:Gbem_3336 cytochrome c class I. (117 aa)
	GM21_1291	PFAM: Di-haem cytochrome c peroxidase; KEGG: geo:Geob_2579 di-heme cytochrome c peroxidase. (487 aa)
	GM21_2044	KEGG: gbm:Gbem_2183 cytochrome c, class I. (111 aa)
	GM21_4113	KEGG: gbm:Gbem_4022 hypothetical protein. (274 aa)
	GM21_3443	KEGG: gbm:Gbem_0818 cytochrome c peroxidase. (513 aa)
	GM21_3288	KEGG: gbm:Gbem_0972 hypothetical protein. (103 aa)
	GM21_2302	PFAM: Di-haem cytochrome c peroxidase; KEGG: mca:MCA1906 cytochrome c peroxidase family protein. (361 aa)
	GM21_2329	KEGG: gbm:Gbem_1881 cytochrome c family protein. (442 aa)
	GM21_2628	PFAM: cytochrome c class I; KEGG: gbm:Gbem_1585 cytochrome c class I. (138 aa)
	GM21_2733	KEGG: rpt:Rpal_1103 putative cytochrome c class I protein. (170 aa)
	GM21_2849	KEGG: geo:Geob_0121 hypothetical protein. (124 aa)
	GM21_2850	PFAM: cytochrome c class I; KEGG: geo:Geob_0122 cytochrome c class I. (312 aa)
	GM21_3062	KEGG: gbm:Gbem_1211 hypothetical protein. (118 aa)
	GM21_3043	PFAM: cytochrome c class I; KEGG: gbm:Gbem_1234 cytochrome c class I. (163 aa)
	GM21_3033	KEGG: gbm:Gbem_1249 cytochrome c class I. (238 aa)
	GM21_0019	PFAM: Di-haem cytochrome c peroxidase; KEGG: gbm:Gbem_0020 di-haem cytochrome c peroxidase. (345 aa)
	GM21_0045	Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). (300 aa)
	GM21_0097	KEGG: gbm:Gbem_0116 hypothetical protein. (166 aa)
	GM21_0101	PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: gbm:Gbem_0120 cytochrome c oxidase mono-heme subunit/FixO. (329 aa)
	GM21_0893	KEGG: gbm:Gbem_3352 hypothetical protein. (119 aa)

Your Current Organism:

Geobacter sp. M21

NCBI taxonomy Id: 443144
Other names: G. sp. M21

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GM21_0019	GM21_0045	PFAM: Di-haem cytochrome c peroxidase; KEGG: gbm:Gbem_0020 di-haem cytochrome c peroxidase.	Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	0.424
GM21_0019	GM21_0101	PFAM: Di-haem cytochrome c peroxidase; KEGG: gbm:Gbem_0020 di-haem cytochrome c peroxidase.	PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: gbm:Gbem_0120 cytochrome c oxidase mono-heme subunit/FixO.	0.621
GM21_0019	GM21_1291	PFAM: Di-haem cytochrome c peroxidase; KEGG: gbm:Gbem_0020 di-haem cytochrome c peroxidase.	PFAM: Di-haem cytochrome c peroxidase; KEGG: geo:Geob_2579 di-heme cytochrome c peroxidase.	0.737
GM21_0019	GM21_2044	PFAM: Di-haem cytochrome c peroxidase; KEGG: gbm:Gbem_0020 di-haem cytochrome c peroxidase.	KEGG: gbm:Gbem_2183 cytochrome c, class I.	0.475
GM21_0019	GM21_2628	PFAM: Di-haem cytochrome c peroxidase; KEGG: gbm:Gbem_0020 di-haem cytochrome c peroxidase.	PFAM: cytochrome c class I; KEGG: gbm:Gbem_1585 cytochrome c class I.	0.416
GM21_0019	GM21_3041	PFAM: Di-haem cytochrome c peroxidase; KEGG: gbm:Gbem_0020 di-haem cytochrome c peroxidase.	TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: gbm:Gbem_1236 cytochrome c oxidase, cbb3-type, subunit II.	0.607
GM21_0019	GM21_3443	PFAM: Di-haem cytochrome c peroxidase; KEGG: gbm:Gbem_0020 di-haem cytochrome c peroxidase.	KEGG: gbm:Gbem_0818 cytochrome c peroxidase.	0.581
GM21_0045	GM21_0019	Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	PFAM: Di-haem cytochrome c peroxidase; KEGG: gbm:Gbem_0020 di-haem cytochrome c peroxidase.	0.424
GM21_0045	GM21_0097	Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	KEGG: gbm:Gbem_0116 hypothetical protein.	0.915
GM21_0045	GM21_0101	Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: gbm:Gbem_0120 cytochrome c oxidase mono-heme subunit/FixO.	0.993
GM21_0045	GM21_0910	Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	PFAM: cytochrome c class I; KEGG: gbm:Gbem_3336 cytochrome c class I.	0.979
GM21_0045	GM21_1291	Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	PFAM: Di-haem cytochrome c peroxidase; KEGG: geo:Geob_2579 di-heme cytochrome c peroxidase.	0.424
GM21_0045	GM21_2044	Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	KEGG: gbm:Gbem_2183 cytochrome c, class I.	0.904
GM21_0045	GM21_2302	Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	PFAM: Di-haem cytochrome c peroxidase; KEGG: mca:MCA1906 cytochrome c peroxidase family protein.	0.424
GM21_0045	GM21_2329	Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	KEGG: gbm:Gbem_1881 cytochrome c family protein.	0.741
GM21_0045	GM21_2733	Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	KEGG: rpt:Rpal_1103 putative cytochrome c class I protein.	0.619
GM21_0045	GM21_2849	Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	KEGG: geo:Geob_0121 hypothetical protein.	0.904
GM21_0045	GM21_3033	Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	KEGG: gbm:Gbem_1249 cytochrome c class I.	0.941
GM21_0045	GM21_3041	Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: gbm:Gbem_1236 cytochrome c oxidase, cbb3-type, subunit II.	0.993
GM21_0045	GM21_3043	Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	PFAM: cytochrome c class I; KEGG: gbm:Gbem_1234 cytochrome c class I.	0.990