STRINGSTRING
GM21_0158 GM21_0158 GM21_2478 GM21_2478 GM21_2606 GM21_2606 GM21_2804 GM21_2804 GM21_3192 GM21_3192 GM21_4005 GM21_4005
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GM21_0158PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: gbm:Gbem_0176 respiratory-chain NADH dehydrogenase domain 51 kDa subunit. (421 aa)
GM21_2478TIGRFAM: polysaccharide export protein, PEP-CTERM sytem-associated; PFAM: polysaccharide export protein; KEGG: gbm:Gbem_1769 polysaccharide export protein, PEP-Cterm system-associated. (268 aa)
GM21_2606PFAM: polysaccharide export protein; KEGG: gbm:Gbem_1604 polysaccharide export protein. (936 aa)
GM21_2804PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_1450 respiratory-chain NADH dehydrogenase domain 51 kDa subunit. (636 aa)
GM21_3192PFAM: polysaccharide export protein; KEGG: gbm:Gbem_1069 polysaccharide export protein. (227 aa)
GM21_4005PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_3921 respiratory-chain NADH dehydrogenase domain 51 kDa subunit. (593 aa)
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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