STRINGSTRING
GM21_4125 GM21_4125 GM21_1067 GM21_1067 GM21_1956 GM21_1956 GM21_2242 GM21_2242 GM21_2807 GM21_2807 GM21_2853 GM21_2853 GM21_3885 GM21_3885 GM21_3971 GM21_3971 nuoI-2 nuoI-2 GM21_4004 GM21_4004
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GM21_4125TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_4034 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein. (1238 aa)
GM21_1067PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_3195 4Fe-4S ferredoxin iron-sulfur binding domain protein. (260 aa)
GM21_1956PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_2266 4Fe-4S ferredoxin iron-sulfur binding domain protein. (278 aa)
GM21_2242PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_1978 nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein. (314 aa)
GM21_2807PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_1447 4Fe-4S ferredoxin iron-sulfur binding domain protein. (1012 aa)
GM21_2853PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: gme:Gmet_2118 FAD dependent oxidoreductase. (614 aa)
GM21_3885Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; ATPase associated with various cellular activities AAA_5; hydrogenase large subunit domain protein; SMART: AAA ATPase; KEGG: gbm:Gbem_3802 putative sigma54 specific transcriptional regulator. (759 aa)
GM21_3971PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_3883 4Fe-4S ferredoxin iron-sulfur binding domain protein. (84 aa)
nuoI-2NADH-quinone oxidoreductase, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (132 aa)
GM21_4004PFAM: molybdopterin oxidoreductase; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: gbm:Gbem_3920 molybdopterin oxidoreductase. (821 aa)
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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