STRINGSTRING
GM21_0899 GM21_0899 GM21_0900 GM21_0900 GM21_1753 GM21_1753 GM21_1754 GM21_1754 glk glk GM21_2706 GM21_2706 GM21_2957 GM21_2957 GM21_3512 GM21_3512 GM21_4111 GM21_4111
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GM21_0899TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: gbm:Gbem_3346 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. (355 aa)
GM21_0900dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family. (278 aa)
GM21_1753Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. (301 aa)
GM21_1754KEGG: gbm:Gbem_2463 dTDP-4-dehydrorhamnose 3 5-epimerase and related enzymes-like protein. (162 aa)
glkGlucokinase; KEGG: gbm:Gbem_2002 glucokinase; TIGRFAM: glucokinase; PFAM: Glucokinase; ROK family protein; Belongs to the bacterial glucokinase family. (327 aa)
GM21_2706PFAM: inositol monophosphatase; KEGG: gbm:Gbem_1510 inositol monophosphatase. (266 aa)
GM21_2957PFAM: ROK family protein; KEGG: gbm:Gbem_1326 ROK family protein. (306 aa)
GM21_3512dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family. (292 aa)
GM21_4111dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family. (730 aa)
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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