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ubiX ubiX GM21_2180 GM21_2180 GM21_2809 GM21_2809 GM21_2810 GM21_2810 GM21_2811 GM21_2811 GM21_2822 GM21_2822 GM21_2823 GM21_2823 GM21_2932 GM21_2932 GM21_3965 GM21_3965
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ubiX3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (203 aa)
GM21_2180PFAM: 4-oxalocrotonate tautomerase; KEGG: gur:Gura_2466 4-oxalocrotonate tautomerase. (63 aa)
GM21_2809KEGG: gbm:Gbem_1445 4Fe-4S ferredoxin, iron-sulfur binding protein. (177 aa)
GM21_2810KEGG: gbm:Gbem_1444 aldehyde ferredoxin oxidoreductase; PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; SMART: Aldehyde ferredoxin oxidoreductase. (673 aa)
GM21_2811TIGRFAM: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gbm:Gbem_1443 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. (381 aa)
GM21_2822TIGRFAM: cyclohexa-1,5-dienecarbonyl-CoA hydratase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gbm:Gbem_1432 cyclohexa-1,5-dienecarbonyl-CoA hydratase. (269 aa)
GM21_2823TIGRFAM: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: gbm:Gbem_1431 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. (357 aa)
GM21_2932PFAM: iron-containing alcohol dehydrogenase; KEGG: gbm:Gbem_1353 iron-containing alcohol dehydrogenase. (387 aa)
GM21_3965PFAM: iron-containing alcohol dehydrogenase; KEGG: gbm:Gbem_3877 iron-containing alcohol dehydrogenase. (386 aa)
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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